Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060067.seq
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.52
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720... 29 2.8
12_02_0123 - 13930138-13932471 28 6.4
09_02_0602 - 11118788-11119178,11119262-11119451,11119590-111196... 28 6.4
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 6.4
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 28 6.4
03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94... 28 6.4
10_02_0139 + 5753426-5754841,5755566-5755655,5756011-5756379,575... 27 8.5
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 523 AISATSTRSSNPRFHTPTTP 582
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>09_02_0589 +
10969195-10969325,10971135-10971607,10971894-10972032,
10972645-10972722,10972886-10973055,10973199-10973467,
10973655-10973781,10973964-10974035,10975084-10975273,
10975480-10975879
Length = 682
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 4 HEVPLVVSAASAIPSLVNAFSSSKPLQTDNPSARSMDMQ 120
+ + LV +AAS +P ++NA + DNP+ +D +
Sbjct: 165 YNISLVPTAASKLPPMINALEIYTLISHDNPTTFPVDFE 203
>12_02_0123 - 13930138-13932471
Length = 777
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 204 TVSSTFDHPFSTPXLRST--GTETKSNSVTVQSLPNVSSIIRGYRDAYLVNL 353
T++ +HP +P ++S + + S S+P+ + +R Y D + VNL
Sbjct: 643 TIAGHINHPVFSPDMKSIVFAADLAAVSADPISMPHFTHSVRPYGDIFSVNL 694
>09_02_0602 -
11118788-11119178,11119262-11119451,11119590-11119658,
11119890-11120016,11120134-11120399,11120760-11120872,
11121693-11121764,11121860-11121998,11124277-11124360,
11125278-11125771,11127604-11128187
Length = 842
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 1 RHEVPLVVSAASAIPSLVNAFSSSKPLQTDNPSARSMD 114
++ + L + +S +P +VNAF + DNPS D
Sbjct: 322 KYNITLAATDSSQLPPIVNAFEVYGRIPLDNPSTFPTD 359
>06_01_0018 +
194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 514 PSPAISATSTRSSNPRFHTPTTPDLT 591
PSP +A TRSS+ R H TP T
Sbjct: 9 PSPTSTARETRSSSARGHASPTPTPT 34
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 214 QRLIIPFQRLXFDLLAPKPNRTVSLCNHYRTSPPSSEATATRILSILKLSFXLP 375
+RL++ + R P R LC + T+PPS A+ + + ++ +S P
Sbjct: 165 ERLLVAYLRHERCFSFPNVERICKLCRRHVTTPPSPGASGSSLHTVEIISVQKP 218
>03_01_0121 +
940338-940637,941023-941324,941417-941969,943889-944848
Length = 704
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 256 LAPKPNRTVSL--CNHYRTSPPSSEATATRILS--ILKLSFXLPXLASKXQSQLTFVGL 420
LA VSL CNHY +PP +EA + ++ ++ P +ASK +L G+
Sbjct: 110 LAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAGI 168
>10_02_0139 +
5753426-5754841,5755566-5755655,5756011-5756379,
5756796-5756982,5757567-5757631
Length = 708
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 462 PSSARITIGGLALMASATLPCDLGYINPIIKSPIPYTNH 578
PS++ GG+ +S+ D G++ I+++P P T H
Sbjct: 19 PSASPSAAGGVPSSSSSEASLDGGFLLRILQNPPPQTRH 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.126 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,454,841
Number of Sequences: 37544
Number of extensions: 224093
Number of successful extensions: 706
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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