Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060067.seq
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                 30   1.6  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               28   5.0  
SB_47998| Best HMM Match : YTV (HMM E-Value=3.1)                       28   5.0  
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)               28   6.6  
SB_35548| Best HMM Match : BPL_LipA_LipB (HMM E-Value=1.5e-27)         28   6.6  

>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 464 FIRSHYYWRSRPYGISYPPLRSRLHQPDHQIPDSIHQ 574
           F   HYYW     GI+Y  LR  LH P   +P ++ +
Sbjct: 60  FCWKHYYWNLTNEGITY--LRDFLHLPTEIVPATLRR 94


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 514 PSPAISATSTRSSNPRFHTPTTPDLT 591
           P+PA + T T+ + P  HTPTTP  T
Sbjct: 94  PTPATTPTPTKPT-PTAHTPTTPTPT 118


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = -2

Query: 434 CDVSSSPTKVNCDWXFXARXGSXNDSFKIDKIRVAVASDDGGDVR**LHSDTVRFGFGAS 255
           C  +  P   +  W F +  G+  DS  +  +  +     G  V   +HS  VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334

Query: 254 RSK 246
             +
Sbjct: 335 EEE 337


>SB_47998| Best HMM Match : YTV (HMM E-Value=3.1)
          Length = 245

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
 Frame = +3

Query: 234 STPXLRSTGTETKSNSVTVQSLPNVSSIIRGYRDAYLVNLEAVVXTSAPSXKXPVTVDLC 413
           + P +R T     +  VTV ++ ++S  IR Y     V + A+  TS P     VTV   
Sbjct: 75  TVPAIRDTSEPISTYHVTVIAIRHISEPIRSYH----VTVPAIRDTSEPISSYHVTVLAI 130

Query: 414 WTTAD------VTVEGVNVLXXP-SSARITI 485
             T++      VTV  +  +  P SS  +T+
Sbjct: 131 RDTSEPISSYHVTVPAIRDISEPISSYHVTV 161



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 234 STPXLRSTGTETKSNSVTVQSLPNVSSIIRGYRDAYLVNLEAVVXTSAPSXKXPVTV 404
           + P +R T     +  VTV ++ ++S  IR Y     V + A+  TS P     VTV
Sbjct: 160 TVPAIRDTSEPISTYHVTVIAIRHISEPIRSYH----VTVPAIRDTSEPISSYHVTV 212


>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
          Length = 1803

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
 Frame = -2

Query: 569  VWNRGFDDRVDVAEIAG-----EGS*CHKGETANSNASG*RXXQHIDSFNCD---VSSSP 414
            +W++     +DVAE+AG     EG       TA S   G     HID F C    +S  P
Sbjct: 1545 LWHKDTAGHIDVAEVAGGGATNEGLKKRAAYTAQSVEVGLIVNLHIDIFKCGRYLLSGVP 1604

Query: 413  TKVNCD 396
             K+  +
Sbjct: 1605 MKIRLE 1610


>SB_35548| Best HMM Match : BPL_LipA_LipB (HMM E-Value=1.5e-27)
          Length = 378

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 250 DLLAPKPNRTVSLCNHY 300
           D +APKP  T+ LC H+
Sbjct: 39  DSMAPKPQNTIFLCEHF 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,341
Number of Sequences: 59808
Number of extensions: 252915
Number of successful extensions: 826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)