Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060067.seq
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57710.1 68418.m07214 heat shock protein-related contains sim...    30   1.0  
At4g20960.1 68417.m03035 cytidine/deoxycytidylate deaminase fami...    30   1.0  

>At5g57710.1 68418.m07214 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 990

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +3

Query: 231 FSTPXLRSTGTETKSNSVTVQSLPNVSSIIRGYR 332
           FS+P +++T  ++ +NSVT   +P+VSS+   +R
Sbjct: 152 FSSPAVKATIEQSLNNSVTPTPIPSVSSVGLNFR 185


>At4g20960.1 68417.m03035 cytidine/deoxycytidylate deaminase family
           protein similar to SP|P25539 Riboflavin biosynthesis
           protein ribD [Includes:
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (EC 3.5.4.26) (Riboflavin-specific deaminase);
           5-amino-6-(5- phosphoribosylamino)uracil reductase (EC
           1.1.1.193) (HTP reductase)] {Escherichia coli}; contains
           Pfam profile PF00383: Cytidine and deoxycytidylate
           deaminase zinc-binding region
          Length = 426

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +1

Query: 256 LAPKPNRTVSL--CNHYRTSPPSSEATATRILS--ILKLSFXLPXLASKXQSQLTFVGLL 423
           LA      VSL  CNHY  +PP +EA     +   ++ +    P + S   S+L   G+ 
Sbjct: 133 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGID 192

Query: 424 LTSQLKESMC 453
           +T  ++E +C
Sbjct: 193 VTVSVEEELC 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,605,071
Number of Sequences: 28952
Number of extensions: 174963
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)