Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060066.seq
         (639 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    28   0.075
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.8  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   3.8  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   5.0  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   5.0  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 0.075
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 184 IKNLIVFFSFCCFLF 140
           +K ++ FFSFCC LF
Sbjct: 6   LKRVLFFFSFCCILF 20



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 186 ELKTLLFFFRFVVSYLFV 133
           ELK +LFFF F     F+
Sbjct: 5   ELKRVLFFFSFCCILFFI 22


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = -1

Query: 144 YLFVCNKALATILMHVCRAFKIVHPRQGH*RMAVFITQYIYNENILVP 1
           Y F C   +   + + CRAF I+ P   +   +++  +  +  N++ P
Sbjct: 286 YYFYCALIILLCIYYFCRAF-IIFPTHFYCAFSLYPLKSTFYLNVVRP 332


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 219 SCFLLYFQLKIELKTLLFFFR--FVVSYLFVCNKALATI 109
           S +L+   +  +   LL F+   F+V+ L++CN+   T+
Sbjct: 256 SAYLISNPIMWDRVMLLTFWSAFFIVNVLYICNQCYNTV 294


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 516 RLYKGKRQTGRVTWPY 563
           R  K KRQ   + WPY
Sbjct: 122 RRMKDKRQRMAIAWPY 137


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 183 LKTLLFFFRFVVSYLFVCNKALATILMH 100
           L ++L FF F ++ L +    +A  LMH
Sbjct: 239 LGSILIFFIFPLAILIIVYILIAKTLMH 266


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,875
Number of Sequences: 336
Number of extensions: 2842
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)