Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060066.seq
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1161 + 31374240-31374403,31374495-31374812,31375347-313754...    28   7.2  
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    27   9.5  

>04_04_1161 +
           31374240-31374403,31374495-31374812,31375347-31375493,
           31375674-31375754,31375799-31375886,31375999-31376176,
           31376705-31376794,31376795-31376866,31377247-31377257
          Length = 382

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 442 ELFGDSRITSGY*NRQKKRHL 504
           EL GD+ + SG  NR++KRH+
Sbjct: 2   ELSGDAAVVSGSGNRKRKRHV 22


>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 179 FNSIFNWKYSRKQEFTVTYRHFTSS 253
           F S FNW YS++ E     R+FT +
Sbjct: 678 FTSFFNWDYSKQTEAGNPERNFTKA 702


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,482,079
Number of Sequences: 37544
Number of extensions: 279256
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)