Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060066.seq
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)                 29   3.2  
SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)                 28   7.4  
SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
          Length = 1212

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -1

Query: 225  VNSCFLLYFQLKIELKTLLFFFRFVVSYLFVCNKALATILMHVCRAFKIV 76
            +  C     QLK+  K  LF      +YLF C+K LATI +   +A K V
Sbjct: 1164 IQLCHPSTHQLKMATKRYLFALDLEKAYLFACDK-LATIALLSVQAAKHV 1212


>SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)
          Length = 367

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -1

Query: 273 SARTVTMLEVKCL*VTVNSCFLLYFQLKIELKTLLFFFRFVVSYLFVCNKALATIL 106
           +AR   ++ + C  VT   C++ YF  +I    +    RF   +L  CN A++  L
Sbjct: 250 AARNSILVMLVCASVTFVICWVTYFAAQIAYDNVPCGLRFWRFFLAHCNSAISPCL 305


>SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1492

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 486 AEKKTSVSLLRLYKGKRQTGRVTWPYLNIGHLTGLPSWQDHLGPVTVAQE 635
           A K+T  S+L  ++     G V++     G  +  P W+ H G +T + +
Sbjct: 707 ASKETETSVLLKWRPPDFVGSVSYTITYRGMKSYWPKWKGHKGEITTSSQ 756


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 426  SVASTGPSKSSXRRIYHRI-GNATN*KDPARNSVGCVYGLIY 304
            SV +   S+++   + H+I G   N  D  RNS+GC    IY
Sbjct: 3868 SVTALESSENAVATLMHKIDGTLDNLSDEDRNSIGCSVTEIY 3909


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,126,887
Number of Sequences: 59808
Number of extensions: 328225
Number of successful extensions: 477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)