Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060066.seq
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12966-4|AAA20616.1|  365|Caenorhabditis elegans Carbonic anhydr...    28   6.5  
Z70034-5|CAA93851.2|  197|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U12966-4|AAA20616.1|  365|Caenorhabditis elegans Carbonic anhydrase
           protein 1 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 213 FLLYFQLKIELKTLLFFFRFVVSYLFVCNKALAT 112
           F L   L I LK + + F    ++LF CNK L T
Sbjct: 85  FFLIIYLTISLKLMRYIF--TCAHLFACNKKLGT 116


>Z70034-5|CAA93851.2|  197|Caenorhabditis elegans Hypothetical
           protein C18E9.5 protein.
          Length = 197

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -1

Query: 399 SSXRRIYHRIGNATN*KD 346
           S+ +RIYHRIG A N KD
Sbjct: 112 STRKRIYHRIGIAPNDKD 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,520,348
Number of Sequences: 27780
Number of extensions: 250837
Number of successful extensions: 541
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)