Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060066.seq
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = -1

Query: 159 RFVVSYLFVCNKALATILMHVCRAFKIVHPRQGH*RMAVFITQYIYNENIL 7
           +FVV  ++    AL  +   VC   K + P   +    VF   Y+ N + +
Sbjct: 331 QFVVDAVYAFALALHNLQKDVCSKLKGLCPSMANYDRGVFYKNYLLNVSFI 381


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = -1

Query: 159 RFVVSYLFVCNKALATILMHVCRAFKIVHPRQGH*RMAVFITQYIYNENIL 7
           +FVV  ++    AL  +   VC   K + P   +    VF   Y+ N + +
Sbjct: 421 QFVVDAVYAFALALHNLQKDVCSKLKGLCPSMANYDRGVFYKNYLLNVSFI 471


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 333 SFWPDLFSWSRFRS 374
           SFW + +SW+ F++
Sbjct: 320 SFWLEQYSWALFKA 333


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 333 SFWPDLFSWSRFRS 374
           SFW + +SW+ F++
Sbjct: 288 SFWLEQYSWALFKA 301


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 359 PTEKIRPETQWAV 321
           P E +RPE+ WA+
Sbjct: 646 PEEFLRPESGWAI 658


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 389 AESTTGSETRPTEKIRPETQ 330
           A  TTG+ T PT ++R   Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,398
Number of Sequences: 438
Number of extensions: 3060
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)