Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060065.seq
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 123 1e-28
07_01_0578 + 4295386-4296489,4297394-4297507 123 2e-28
02_03_0152 - 15767985-15768317 35 0.053
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.093
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.5
08_02_1278 - 25838146-25839411 30 2.0
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.0
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 2.0
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 2.6
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 29 2.6
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 29 3.5
03_02_0530 + 9236323-9236346,9236933-9237185,9237872-9238119,923... 29 4.6
02_04_0457 + 23093020-23093343,23093798-23093806 29 4.6
05_05_0015 + 21530547-21531047 28 6.1
12_02_0030 + 12469707-12469902,12470337-12470658,12472208-124722... 28 8.1
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 8.1
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 123 bits (297), Expect = 1e-28
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +3
Query: 255 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 428
S+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 58 SRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWH 115
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/67 (47%), Positives = 44/67 (65%)
Frame = +1
Query: 490 PSARSG*GHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLXAWSDILKVYKSQRLRAGX 669
PS GH IE +PE PLVV+D ++ I KT Q++ L+++ A++D K S +RAG
Sbjct: 137 PSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGK 196
Query: 670 GKMRNRR 690
GKMRNRR
Sbjct: 197 GKMRNRR 203
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +1
Query: 94 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVARR 264
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY V+RR
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRR 60
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 123 bits (296), Expect = 2e-28
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +3
Query: 255 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 428
S+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 59 SRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWH 116
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/67 (47%), Positives = 43/67 (64%)
Frame = +1
Query: 490 PSARSG*GHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLXAWSDILKVYKSQRLRAGX 669
PS GH IE +PELPLV++D + I KT QA+ L+++ A++D K S +R G
Sbjct: 138 PSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGK 197
Query: 670 GKMRNRR 690
GKMRNRR
Sbjct: 198 GKMRNRR 204
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Frame = +1
Query: 103 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVARR 264
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY V+RR
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRR 61
>02_03_0152 - 15767985-15768317
Length = 110
Score = 35.1 bits (77), Expect = 0.053
Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Frame = -2
Query: 372 YRRHPDRTYEYHHHGHAEFGRQ----HVQYPMIQ-HWFGDQPPCYAVGLPRV-LGHRNVN 211
YR P HG AEF RQ H +P HW +PP A G+P LG
Sbjct: 19 YRYRPSPMLPELSHGVAEFSRQSTRRHAPWPPSGGHWSSSEPPLVAAGMPSPGLGRTR-- 76
Query: 210 IIDQVRTDGRLEHEREG 160
DGR E E +G
Sbjct: 77 -RASAPLDGRREEEDDG 92
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 34.3 bits (75), Expect = 0.093
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 228 QELEAALLRSKEAGHQTS--AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 392
+EL A S A + A+SW TGRA A + R R GG R A N G R
Sbjct: 16 RELARAAASSVAANREGGGGAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +3
Query: 66 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 221
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>08_02_1278 - 25838146-25839411
Length = 421
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 609 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSS 508
A +E LF L+D+LD V +G+L LF+ S+
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESA 122
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 387 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 280
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -2
Query: 360 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 259
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 357 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 259
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 66 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 221
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 351 TYEYHH-HGHAEFGRQHVQYPMIQHWFGDQPPCYAVGLPRVLGH 223
T+++HH HGH FGR H +P H G Y G P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHHPAGGMVN-YGGGAPYYAAH 184
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +3
Query: 144 AGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLRSKEAGHQTSAESWGTGRAVARIP 323
+G ++A + + P GP ++ +++L A R A + +A + T +A +
Sbjct: 448 SGYTRAATLNLPSVIPIGPRN--TQENIKQLLAGGQRELVATGEAAATAAATAKATPPLA 505
Query: 324 R-VRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 422
R GG HR G+G G GG WRR
Sbjct: 506 RRTADGGAHR-GRGGGGAEADGGARRGRGGGWRR 538
>03_02_0530 +
9236323-9236346,9236933-9237185,9237872-9238119,
9239565-9239972
Length = 310
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 552 YNQGKLGNLFNNVSSA*TSAGTPVAATLPPRP 457
Y Q + + NNV T TP+AA PP P
Sbjct: 214 YQQASMSSYANNVRPGETHGYTPIAAKPPPPP 245
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 267 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 371
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>05_05_0015 + 21530547-21531047
Length = 166
Score = 28.3 bits (60), Expect = 6.1
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +3
Query: 213 SRFYVQELEAALLRSKEAGHQTSAESWGTGRAVARIPR--VRGGGTHRSGQGAFGNMCRG 386
+RF L+ AL + A +TS W GR R+PR V G G G + RG
Sbjct: 76 TRFEYGILKMALRMAVAAAPKTSHRRWRQGRWRRRLPRHPVADGIEDSDGGGGSRALLRG 135
Query: 387 GRMFAPTKPWR-RW 425
R + WR RW
Sbjct: 136 WRR---GRLWRQRW 146
>12_02_0030 +
12469707-12469902,12470337-12470658,12472208-12472245,
12472486-12473573
Length = 547
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +3
Query: 252 RSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 416
RS EA + + GR A + RV GGG+ G+GA + G + W
Sbjct: 71 RSDEARPERRRQEGAGGRG-AGVRRVEGGGSGAVGEGARAAVLGGAATIGARRLW 124
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 408 SWGRTYVHHDTCYRRHPDRTYEYHH 334
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,183,387
Number of Sequences: 37544
Number of extensions: 426209
Number of successful extensions: 1668
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1659
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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