Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060062.seq
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 65 1e-11
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 64 2e-11
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 30 0.40
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065... 29 1.2
12_02_0027 + 12427525-12427698,12430082-12430150,12430763-124308... 28 2.1
07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312 27 3.8
06_03_1177 + 28174909-28175016,28176386-28176484,28177188-281772... 27 5.0
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099... 26 6.6
12_02_1060 - 25752181-25754229 26 8.7
11_04_0306 + 16176873-16177124,16178155-16179152,16179204-161793... 26 8.7
01_01_0882 - 6912053-6912319,6912434-6912484,6912979-6913125,691... 26 8.7
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +1
Query: 64 PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGR 186
P+RPD+V VH +S N RQPY VS+ AGHQT AESWGTGR
Sbjct: 35 PLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGR 75
Score = 37.1 bits (82), Expect = 0.004
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +1
Query: 100 SMSKNSRQPYCVSKEAGHQTXAESWGTGRMFAPTKPXRSWXRRVNL 237
++S+ R P + AG GRMFAPTK R W RRVN+
Sbjct: 76 AVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNV 121
Score = 35.1 bits (77), Expect = 0.014
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 9 GRAVXRIPRVRGGGTHR 59
GRAV RIPRV GGGTHR
Sbjct: 74 GRAVSRIPRVPGGGTHR 90
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1
Query: 64 PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGR 186
PIRPD+V H +S N RQPY VS+ AGHQT AESWGTGR
Sbjct: 34 PIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGR 74
Score = 36.3 bits (80), Expect = 0.006
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +1
Query: 100 SMSKNSRQPYCVSKEAGHQTXAESWGTGRMFAPTKPXRSWXRRVNL 237
++S+ R P + AG GRMFAPTK R W RRVN+
Sbjct: 75 AVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNI 120
Score = 35.1 bits (77), Expect = 0.014
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 9 GRAVXRIPRVRGGGTHR 59
GRAV RIPRV GGGTHR
Sbjct: 73 GRAVSRIPRVPGGGTHR 89
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 30.3 bits (65), Expect = 0.40
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 99 NVNIIDQVRTDGRTYEYHH-HGHAEFGRQHVP 7
+ +I V T+++HH HGH FGR H P
Sbjct: 131 DATVIHMVHDYPYTHDHHHGHGHHLFGRDHWP 162
>04_04_0794 +
28104725-28104829,28105721-28105762,28106470-28106544,
28106811-28106950,28107036-28107093,28107239-28107241,
28107740-28107849,28108562-28108648,28108773-28108856,
28109212-28109277,28109377-28109488,28109949-28110149
Length = 360
Score = 28.7 bits (61), Expect = 1.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 8 GTCCRPNSACPWWWYS*VRPSVRTWSMMF 94
GTC + C +WWY + + W++ F
Sbjct: 166 GTCIAKRNYCRFWWYIFEQTVLTVWTVAF 194
>12_02_0027 +
12427525-12427698,12430082-12430150,12430763-12430823,
12431147-12431264,12431346-12431422,12432881-12432996,
12433227-12433661
Length = 349
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 117 RVLGHRNVNIIDQVRTDGRTYEYHHHGHAEF 25
R+ GHR N + + DG E +HH H +
Sbjct: 281 RIKGHRVYNFAYKPQWDGEDIEKNHHYHVHY 311
>07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312
Length = 133
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 207 GLRGGEHTSSTP*FSXGLVTSLLAHAVGLPRVLGHRNVNIIDQV 76
GL+ G+ T + L + H +G+ VLG +N+ ++DQ+
Sbjct: 90 GLQTGDPAGFT--LADTLACGAVGHIMGVGVVLGLKNIGVLDQI 131
>06_03_1177 +
28174909-28175016,28176386-28176484,28177188-28177238,
28177394-28177517,28177765-28177883,28177954-28178055,
28178124-28178198,28178390-28178466,28178920-28179169,
28179311-28179664,28179807-28179941,28180097-28180225
Length = 540
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 111 LGHRNVNIIDQVRTDGRTYEYHHHGHAEFGRQHV 10
LGH ++N++D V +GR E +H ++ G HV
Sbjct: 501 LGHVDINLVDVV-NNGRINEKYHLINSRNGMVHV 533
>08_02_0085 +
12108474-12108552,12108656-12108759,12109726-12109925,
12110003-12110103,12110184-12110379,12110584-12110745,
12110856-12110937,12111741-12112004,12113047-12113174,
12113795-12113957
Length = 492
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 10 DVLSXEFRVSVVVVLIGXPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 156
DV+ + V+ ++V + HV+ S ++ PY V +AGH+
Sbjct: 307 DVIPGDMVVNAMMVAMAAHSGEQAQTIYHVTSSLSNPAPYAVLSDAGHR 355
>12_02_1060 - 25752181-25754229
Length = 682
Score = 25.8 bits (54), Expect = 8.7
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = -1
Query: 279 GSSNGY-LPXRSPLSXVDATVPTPXGLRGGEHTSSTP*FSXGLVTSLLAHAVGLPRVLG 106
G+ GY R L +D T+P P P S GLV L AV VLG
Sbjct: 239 GAIKGYSCYLRYQLWPIDITLPPPPSPPPAPPAPPPPSVSIGLVAGLTVGAVSFVVVLG 297
>11_04_0306 +
16176873-16177124,16178155-16179152,16179204-16179339,
16179448-16179597,16179711-16179891,16181139-16181298,
16182156-16182378
Length = 699
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +3
Query: 30 PRVRGGGTHRXAHPSGPGQ*CSRFYVQELEAALLREQGGWSPNQ 161
P G H P Q +F++ ELE + QG W+ Q
Sbjct: 65 PSAAAAGRHHHLFPKAIAQLVQQFHISELELSF--TQGQWNYEQ 106
>01_01_0882 -
6912053-6912319,6912434-6912484,6912979-6913125,
6913220-6913426,6913524-6914051
Length = 399
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 104 CPRTRGSPTA*ARRLVTKPXLNHGVLD 184
C RT GSP A RLV + +++G +
Sbjct: 36 CTRTGGSPPAPPHRLVARRAMSNGAAE 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,944,372
Number of Sequences: 37544
Number of extensions: 178659
Number of successful extensions: 510
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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