Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060062.seq
         (339 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13382-1|CAA31759.1|  407|Drosophila melanogaster protein ( Dros...    67   5e-12
BT025959-1|ABG02203.1|  233|Drosophila melanogaster IP15855p pro...    67   5e-12
AY069485-1|AAL39630.1|  401|Drosophila melanogaster LD21756p pro...    67   5e-12
AE014297-4196|AAG22173.1|  401|Drosophila melanogaster CG5502-PA...    67   5e-12
X06881-1|CAA29998.1|  123|Drosophila melanogaster protein ( Dros...    38   2e-05
AE014297-152|AAF52092.2| 2228|Drosophila melanogaster CG17735-PA...    29   1.5  
AY113210-1|AAM29215.1|  872|Drosophila melanogaster AT06220p pro...    29   2.0  
AE014296-2188|AAF49882.2|  271|Drosophila melanogaster CG17666-P...    29   2.0  
AE014296-2187|AAN11857.1|  872|Drosophila melanogaster CG17666-P...    29   2.0  
BT001573-1|AAN71328.1|  919|Drosophila melanogaster RE22749p pro...    28   2.7  
AY118301-1|AAM48330.1|  572|Drosophila melanogaster GH08318p pro...    28   2.7  
AE014297-4716|AAN14266.1|  738|Drosophila melanogaster CG1544-PB...    28   2.7  
AE014297-4715|AAF57126.2|  919|Drosophila melanogaster CG1544-PA...    28   2.7  
AE014296-3066|AAF49225.1|  265|Drosophila melanogaster CG6865-PA...    27   8.2  

>X13382-1|CAA31759.1|  407|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for put. ribosomal protein
           L1. ).
          Length = 407

 Score = 67.3 bits (157), Expect = 5e-12
 Identities = 29/44 (65%), Positives = 35/44 (79%)
 Frame = +1

Query: 64  PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFA 195
           PIRPD+VN+VH  + +N+RQ Y VS+ AGHQT AESWGTGR  A
Sbjct: 34  PIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVA 77



 Score = 37.9 bits (84), Expect = 0.003
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3

Query: 9   GRAVXRIPRVRGGGTHR 59
           GRAV RIPRVRGGGTHR
Sbjct: 73  GRAVARIPRVRGGGTHR 89


>BT025959-1|ABG02203.1|  233|Drosophila melanogaster IP15855p
           protein.
          Length = 233

 Score = 67.3 bits (157), Expect = 5e-12
 Identities = 29/44 (65%), Positives = 35/44 (79%)
 Frame = +1

Query: 64  PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFA 195
           PIRPD+VN+VH  + +N+RQ Y VS+ AGHQT AESWGTGR  A
Sbjct: 34  PIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVA 77



 Score = 37.9 bits (84), Expect = 0.003
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3

Query: 9   GRAVXRIPRVRGGGTHR 59
           GRAV RIPRVRGGGTHR
Sbjct: 73  GRAVARIPRVRGGGTHR 89


>AY069485-1|AAL39630.1|  401|Drosophila melanogaster LD21756p
           protein.
          Length = 401

 Score = 67.3 bits (157), Expect = 5e-12
 Identities = 29/44 (65%), Positives = 35/44 (79%)
 Frame = +1

Query: 64  PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFA 195
           PIRPD+VN+VH  + +N+RQ Y VS+ AGHQT AESWGTGR  A
Sbjct: 34  PIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVA 77



 Score = 37.9 bits (84), Expect = 0.003
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3

Query: 9   GRAVXRIPRVRGGGTHR 59
           GRAV RIPRVRGGGTHR
Sbjct: 73  GRAVARIPRVRGGGTHR 89


>AE014297-4196|AAG22173.1|  401|Drosophila melanogaster CG5502-PA
           protein.
          Length = 401

 Score = 67.3 bits (157), Expect = 5e-12
 Identities = 29/44 (65%), Positives = 35/44 (79%)
 Frame = +1

Query: 64  PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFA 195
           PIRPD+VN+VH  + +N+RQ Y VS+ AGHQT AESWGTGR  A
Sbjct: 34  PIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVA 77



 Score = 37.9 bits (84), Expect = 0.003
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3

Query: 9   GRAVXRIPRVRGGGTHR 59
           GRAV RIPRVRGGGTHR
Sbjct: 73  GRAVARIPRVRGGGTHR 89


>X06881-1|CAA29998.1|  123|Drosophila melanogaster protein (
          Drosophila gene forribosomal protein L1 fragment. ).
          Length = 123

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3

Query: 9  GRAVXRIPRVRGGGTHR 59
          GRAV RIPRVRGGGTHR
Sbjct: 11 GRAVARIPRVRGGGTHR 27



 Score = 34.7 bits (76), Expect(2) = 2e-05
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = +1

Query: 181 GRMFAPTKPXRSWXRRVNL 237
           GRMFAPTK  R W RRVN+
Sbjct: 40  GRMFAPTKTFRRWHRRVNV 58



 Score = 30.3 bits (65), Expect(2) = 2e-05
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +1

Query: 151 HQTXAESWGTGRMFA 195
           HQT AESWGTGR  A
Sbjct: 1   HQTSAESWGTGRAVA 15


>AE014297-152|AAF52092.2| 2228|Drosophila melanogaster CG17735-PA
            protein.
          Length = 2228

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
 Frame = -1

Query: 282  AGSSNGYLPXRSPLSXVDATVPTPXGLRGGEHTSSTP*FSXGLVTSLLAHAVGLPRVLGH 103
            AGS  G  P  S  S +   +     L  G    STP    G  +S      G     G 
Sbjct: 979  AGSGPGGAPPSSSGSAMHELLSRATSLGSGNGGRSTPNSGGGSGSSKSRFNAGNSSNAGS 1038

Query: 102  RNVNII---DQVRTDGRTYEYHHHGHAEFGRQH 13
               + +   +  R   +T++ HHH H +  +QH
Sbjct: 1039 SKSSFLASLNPARWGRQTHQNHHHHHQQSQQQH 1071


>AY113210-1|AAM29215.1|  872|Drosophila melanogaster AT06220p
           protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = +2

Query: 11  TCCRP-NSACPWWWY 52
           TCC P ++ CPW WY
Sbjct: 718 TCCMPCSNQCPWSWY 732


>AE014296-2188|AAF49882.2|  271|Drosophila melanogaster CG17666-PB,
           isoform B protein.
          Length = 271

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = +2

Query: 11  TCCRP-NSACPWWWY 52
           TCC P ++ CPW WY
Sbjct: 117 TCCMPCSNQCPWSWY 131


>AE014296-2187|AAN11857.1|  872|Drosophila melanogaster CG17666-PA,
           isoform A protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = +2

Query: 11  TCCRP-NSACPWWWY 52
           TCC P ++ CPW WY
Sbjct: 718 TCCMPCSNQCPWSWY 732


>BT001573-1|AAN71328.1|  919|Drosophila melanogaster RE22749p
           protein.
          Length = 919

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +3

Query: 99  FYVQELEAALLR----EQGGWSPNQX*IMGYWTYVRP 197
           F +QEL+A L +    +   WS  +   MG WT+VRP
Sbjct: 840 FPIQELQAQLAQYGNVQSFVWSQEEHRNMGAWTFVRP 876


>AY118301-1|AAM48330.1|  572|Drosophila melanogaster GH08318p
           protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +3

Query: 99  FYVQELEAALLR----EQGGWSPNQX*IMGYWTYVRP 197
           F +QEL+A L +    +   WS  +   MG WT+VRP
Sbjct: 493 FPIQELQAQLAQYGNVQSFVWSQEEHRNMGAWTFVRP 529


>AE014297-4716|AAN14266.1|  738|Drosophila melanogaster CG1544-PB,
           isoform B protein.
          Length = 738

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +3

Query: 99  FYVQELEAALLR----EQGGWSPNQX*IMGYWTYVRP 197
           F +QEL+A L +    +   WS  +   MG WT+VRP
Sbjct: 659 FPIQELQAQLAQYGNVQSFVWSQEEHRNMGAWTFVRP 695


>AE014297-4715|AAF57126.2|  919|Drosophila melanogaster CG1544-PA,
           isoform A protein.
          Length = 919

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +3

Query: 99  FYVQELEAALLR----EQGGWSPNQX*IMGYWTYVRP 197
           F +QEL+A L +    +   WS  +   MG WT+VRP
Sbjct: 840 FPIQELQAQLAQYGNVQSFVWSQEEHRNMGAWTFVRP 876


>AE014296-3066|AAF49225.1|  265|Drosophila melanogaster CG6865-PA
           protein.
          Length = 265

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 121 QPYCVSKEAGHQTXAESWGT 180
           QP CV  E GH++  + +GT
Sbjct: 131 QPSCVGSEEGHRSLEQEYGT 150


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,532
Number of Sequences: 53049
Number of extensions: 281133
Number of successful extensions: 1553
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 777358641
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)