Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060062.seq
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    50   3e-07
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z78417-10|CAB01688.2|  745|Caenorhabditis elegans Hypothetical p...    27   4.5  
U55373-13|AAC25891.1|  151|Caenorhabditis elegans Hypothetical p...    26   6.0  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AC006733-6|AAF60489.2|  581|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 23/44 (52%), Positives = 30/44 (68%)
 Frame = +1

Query: 64  PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFA 195
           PIRPDLV+ +   + +N RQ + V+ +AG Q  AESWGTGR  A
Sbjct: 30  PIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVA 73



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3

Query: 9   GRAVXRIPRVRGGGTHR 59
           GRAV RIPRVRGGGTHR
Sbjct: 69  GRAVARIPRVRGGGTHR 85


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 22/75 (29%), Positives = 28/75 (37%)
 Frame = +2

Query: 11  TCCRPNSACPWWWYS*VRPSVRTWSMMFTFLCPRTRGSPTA*ARRLVTKPXLNHGVLDVC 190
           T  +P +  P    + V PS  T     T   P T GSPT      VTKP +        
Sbjct: 555 TASQPTTTKPVVTTNSVTPSTGTT----TVPVPTTTGSPTTQTTAPVTKPTVPSSTTQTA 610

Query: 191 SPPRSPXGVGTVAST 235
            P  +P     V +T
Sbjct: 611 PPVTTPTSQPPVTTT 625


>Z78417-10|CAB01688.2|  745|Caenorhabditis elegans Hypothetical
           protein C35C5.2 protein.
          Length = 745

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 82  VNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFAPTKPXRS 216
           V +V  S + N  QP     E G +T  +SW   + +AP+K  RS
Sbjct: 454 VANVLRSAAANVEQPNPTEMEQGRKTLYDSW---KYYAPSKNNRS 495


>U55373-13|AAC25891.1|  151|Caenorhabditis elegans Hypothetical
           protein F26F12.4 protein.
          Length = 151

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 108 QELEAALLREQGGWSPNQX*IMGYWTYVRP 197
           +ELEAA  R  GG++P+Q     Y +Y  P
Sbjct: 120 EELEAAEFRNAGGYAPSQVGGGAYSSYGGP 149


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +2

Query: 107 PRTRGSPTA*ARRLVTKPXLNHGVLDVCSPPRSPXGVGTVAST 235
           P T GSPT      VTKP +         P  +P     V +T
Sbjct: 527 PTTTGSPTTQTTAPVTKPTVPSSTTQTAPPVTTPTSQPPVTTT 569


>AC006733-6|AAF60489.2|  581|Caenorhabditis elegans Hypothetical
           protein Y32H12A.5 protein.
          Length = 581

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -1

Query: 132 AVGLPRVLGHRNVNIIDQVRTDGRTYEYHHHGHAEFGRQH 13
           A  LP   GHR    +   + +  T    H  H E G QH
Sbjct: 154 AAALPFKKGHRRAWSMPNAKGEKMTVAVIHDNHEEGGNQH 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,755,013
Number of Sequences: 27780
Number of extensions: 122154
Number of successful extensions: 283
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)