Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060062.seq
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   4.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   5.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   9.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 234 VDATVPTPXGLRGGEHTSST 175
           +D  +P P  +RGGE T  T
Sbjct: 371 LDEPLPPPPPIRGGEWTFDT 390


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 191 SPPRSPXGVGT 223
           SPPR P GV T
Sbjct: 397 SPPRGPGGVPT 407



 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -1

Query: 51  YHHHGHAEFGRQHV 10
           +HHH H     QH+
Sbjct: 351 HHHHHHQTQSLQHL 364


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 206 GFVGANIRPVPHDSALVW*PASLL 135
           GF+G    P P    L+  P  LL
Sbjct: 80  GFLGRLANPTPQSITLISFPGELL 103


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 153 VTSLLAHAVGLPRVLGHRNVNIIDQ 79
           V  +L+H  G PR++   +    DQ
Sbjct: 330 VAFMLSHPFGTPRIMSSFDFQSKDQ 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,679
Number of Sequences: 438
Number of extensions: 1416
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)