Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060062.seq
         (339 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    75   1e-14
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    75   2e-14
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl...    29   0.60 
At5g60710.1 68418.m07618 zinc finger (C3HC4-type RING finger) fa...    26   5.6  
At3g04640.1 68416.m00497 glycine-rich protein predicted proteins...    25   9.7  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 33/59 (55%), Positives = 43/59 (72%)
 Frame = +1

Query: 10  DVLSXEFRVSVVVVLIGXPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGR 186
           D+ + +    V+  ++  P+RPD+VN VH  +S NSRQPY VSK+AGHQT AESWGTGR
Sbjct: 18  DMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGR 76



 Score = 35.1 bits (77), Expect = 0.012
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 9   GRAVXRIPRVRGGGTHR 59
           GRAV RIPRV GGGTHR
Sbjct: 75  GRAVSRIPRVPGGGTHR 91


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 31/41 (75%), Positives = 35/41 (85%)
 Frame = +1

Query: 64  PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGR 186
           P+RPD+VN VH  +S NSRQPY VSK+AGHQT AESWGTGR
Sbjct: 37  PVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGR 77



 Score = 35.1 bits (77), Expect = 0.012
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 9   GRAVXRIPRVRGGGTHR 59
           GRAV RIPRV GGGTHR
Sbjct: 76  GRAVSRIPRVPGGGTHR 92


>At1g17220.1 68414.m02098 translation initiation factor IF-2,
           chloroplast, putative similar to SP|P57997|IF2C_PHAVU
           Translation initiation factor IF-2, chloroplast
           precursor (PvIF2cp) {Phaseolus vulgaris}
          Length = 1026

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = +1

Query: 7   RDVLSXEFRVSVVVVLIGXPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGR 186
           + +++   + S ++  +G   +P +  +V  S+    R+P  V K A  +   +   +  
Sbjct: 276 KPMVAPPVKKSPILKDLGMAAKPLVSEEVDSSVKSKERKPILVDKFASKKKGVDPAASQA 335

Query: 187 MFAPTKPXR 213
           + APTKP +
Sbjct: 336 VLAPTKPGK 344


>At5g60710.1 68418.m07618 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P97280
           Inter-alpha-trypsin inhibitor heavy chain H3 precursor
           {Mesocricetus auratus}; contains Pfam profiles PF00097:
           Zinc finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 704

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 82  PGPDGWAXL*VPPPRTRGIRXTARPSC 2
           P  D W    +PP R+  I+ T+RP C
Sbjct: 141 PRDDAWMS--IPPRRSSPIQYTSRPDC 165


>At3g04640.1 68416.m00497 glycine-rich protein predicted proteins,
           Arabidopsis thaliana
          Length = 159

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 9   GRAVXRIPRVRGGGTHRXAHPSGPGQ 86
           G  +  IP + GGGTHR  H S  G+
Sbjct: 116 GGGLRPIP-IYGGGTHRSGHHSSGGR 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,546,598
Number of Sequences: 28952
Number of extensions: 121013
Number of successful extensions: 308
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)