Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060060.seq
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41421 Cluster: Uncharacterized 40.1 kDa protein in PK1...   160   3e-38
UniRef50_Q65359 Cluster: Uncharacterized 37.2 kDa protein; n=8; ...    69   1e-10
UniRef50_Q65360 Cluster: ORF 1173; n=1; Orgyia pseudotsugata sin...    42   0.019
UniRef50_Q4S102 Cluster: Chromosome 5 SCAF14773, whole genome sh...    36   0.92 
UniRef50_Q7USX0 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_Q9X551 Cluster: Plasmid partition protein homolog ParB;...    33   4.9  
UniRef50_A3TQX4 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  
UniRef50_Q1HAY3 Cluster: Polyprotein; n=1; Helicobasidium mompa ...    33   8.6  
UniRef50_A5NQH7 Cluster: Putative PAS/PAC sensor protein; n=2; A...    33   8.6  
UniRef50_Q4PGQ1 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_P41421 Cluster: Uncharacterized 40.1 kDa protein in
           PK1-LEF1 intergenic region; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 40.1 kDa
           protein in PK1-LEF1 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 340

 Score =  160 bits (388), Expect = 3e-38
 Identities = 82/115 (71%), Positives = 86/115 (74%)
 Frame = +1

Query: 259 ETTGIDDNVRKVLEQIDAVVPVSVRVQTGRQIFSLNNFEREISQDMLGCLQIILGRFEHF 438
           ET GIDDNVR+VLEQIDAVVPVSVRVQ G QIFSLNNFEREISQDML CLQIILGRFE+F
Sbjct: 89  ETMGIDDNVREVLEQIDAVVPVSVRVQNGWQIFSLNNFEREISQDMLDCLQIILGRFEYF 148

Query: 439 MRNGKLLHIANVFNPNSDAVGWWSINFV**LMCTE*CIEACPPNXCLVCSEAVKK 603
           MRNGKLL IANVFNPN+D VGWW   F            + P       SEAVKK
Sbjct: 149 MRNGKLLRIANVFNPNNDVVGWWYNKFCVVTYVHRIMYRSVPAELVPRLSEAVKK 203



 Score =  111 bits (268), Expect = 1e-23
 Identities = 50/52 (96%), Positives = 51/52 (98%)
 Frame = +3

Query: 9   AKLIIYNYYAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMR 164
           AKLIIYNYYAKYNEVHDVYGESYHH+RIVQEYLSESYVN MSCIERDVTAMR
Sbjct: 5   AKLIIYNYYAKYNEVHDVYGESYHHYRIVQEYLSESYVNGMSCIERDVTAMR 56



 Score = 74.5 bits (175), Expect = 2e-12
 Identities = 38/58 (65%), Positives = 44/58 (75%)
 Frame = +3

Query: 510 NKFCVITYVHRIMHRSVPAEXVPRLFXSGEKNLFV*AKVIMMIRLHVDESYXCPRVIA 683
           NKFCV+TYVHRIM+RSVPAE VPRL  + +K + +  K     RLHVDESY CPRVIA
Sbjct: 173 NKFCVVTYVHRIMYRSVPAELVPRLSEAVKKFIRL-RKSDYDDRLHVDESYNCPRVIA 229



 Score = 67.7 bits (158), Expect = 2e-10
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = +2

Query: 164 RLKIGSCTFDEAVKMIDAGDSIKSLSHWFSTAK 262
           RLK GSCTFDEAVKMIDAGDSIKSLSHWFST++
Sbjct: 57  RLKSGSCTFDEAVKMIDAGDSIKSLSHWFSTSE 89


>UniRef50_Q65359 Cluster: Uncharacterized 37.2 kDa protein; n=8;
           Nucleopolyhedrovirus|Rep: Uncharacterized 37.2 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 331

 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 27/52 (51%), Positives = 38/52 (73%)
 Frame = +3

Query: 9   AKLIIYNYYAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMR 164
           +KL++Y YY  YN  HD YGESYH +RIV E+L+ +YV++ SC+ RD+   R
Sbjct: 5   SKLLVYAYYGSYNLPHDRYGESYHLYRIVHEHLTNTYVSNASCVRRDIATAR 56



 Score = 61.7 bits (143), Expect = 2e-08
 Identities = 33/88 (37%), Positives = 50/88 (56%)
 Frame = +1

Query: 256 GETTGIDDNVRKVLEQIDAVVPVSVRVQTGRQIFSLNNFEREISQDMLGCLQIILGRFEH 435
           G+ TG+  ++++ L  ID   P++ RV     IF+L+    +I  D+   LQ I+GRF H
Sbjct: 88  GDATGLCADMQRALADIDRHAPLARRVGRRANIFALDAIA-DIPSDVTNNLQGIIGRFMH 146

Query: 436 FMRNGKLLHIANVFNPNSDAVGWWSINF 519
           F R   L  +A+VF+P+  A GWW   F
Sbjct: 147 FPRCSGLARVADVFDPDIRADGWWYHKF 174


>UniRef50_Q65360 Cluster: ORF 1173; n=1; Orgyia pseudotsugata single
           capsid nuclopolyhedrovirus|Rep: ORF 1173 - Orgyia
           pseudotsugata single capsid nuclear polyhedrosis
           virus(OpSNPV)
          Length = 388

 Score = 41.5 bits (93), Expect = 0.019
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = -2

Query: 534 HKLSH-KIY*PPSDSVAIRVEHVGDVQQFSVSHEMFKAAQNNLQAAQHVLRNFSFKIVQR 358
           H   H K   PP+    +R++HVGD +Q + + ++ + A + LQ   +V RN   ++ ++
Sbjct: 212 HVRQHAKFVVPPTVGSDVRIKHVGDPRQAAAARKVHEPANDALQVVCYVARNVGDRVQRK 271

Query: 357 EYLPSGLNAHADGNHRV 307
           +  PS   A+A G  RV
Sbjct: 272 DVGPS---ANAPGKRRV 285


>UniRef50_Q4S102 Cluster: Chromosome 5 SCAF14773, whole genome
           shotgun sequence; n=9; Euteleostomi|Rep: Chromosome 5
           SCAF14773, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 1043

 Score = 35.9 bits (79), Expect = 0.92
 Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
 Frame = +1

Query: 226 HQKPFPLVQHGE--TTGIDDNVRKVLE-QIDAVVPVSVRVQTGRQIFSLNN 369
           HQ+  P+VQ+ E  + G+D+++ K LE   DAVV ++V+ +  RQI SL+N
Sbjct: 794 HQQLPPIVQNQEARSLGMDESLFKRLELHRDAVVQLNVQYRMNRQIMSLSN 844


>UniRef50_Q7USX0 Cluster: Putative uncharacterized protein; n=1;
           Pirellula sp.|Rep: Putative uncharacterized protein -
           Rhodopirellula baltica
          Length = 358

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 635 HHNHFGSNE*IFFTASEQTRHXFGGHASMHYSVHISYHTKFIDHHPTASLLGLNTL 468
           HHN + ++  + +   +   H  G H  M +    +YH   ++HH T S  G+ TL
Sbjct: 119 HHNGYTNHGNVQYGQGQTAHHLGGHHVGMTHHAGTTYHHGSVNHHGTTS-QGVYTL 173


>UniRef50_Q9X551 Cluster: Plasmid partition protein homolog ParB;
           n=1; Corynebacterium glutamicum|Rep: Plasmid partition
           protein homolog ParB - Corynebacterium glutamicum
           (Brevibacterium flavum)
          Length = 265

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 23/82 (28%), Positives = 37/82 (45%)
 Frame = +2

Query: 62  VWRVVSPSPYSSGIPIRIVRKRYVVHRAGRDRYARLKIGSCTFDEAVKMIDAGDSIKSLS 241
           +W  +   P +SG+ +  VR   V+  AGR+   R  + +   D  + +ID   S+  L+
Sbjct: 82  IWPGLDVVP-TSGVTLGTVRDELVIAGAGREGRLREALATVAEDYDLILIDCAPSLDQLT 140

Query: 242 HWFSTAKRRASTITSVKCWSKS 307
               TA      +T  K WS S
Sbjct: 141 INGLTAAHGVLVVTHSKQWSLS 162


>UniRef50_A3TQX4 Cluster: Putative uncharacterized protein; n=1;
           Janibacter sp. HTCC2649|Rep: Putative uncharacterized
           protein - Janibacter sp. HTCC2649
          Length = 308

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = -2

Query: 420 QNNLQAAQHVLRNFSFKIVQREYLPSGLNAHA---DGNHRVDL 301
           +N LQAA ++L  ++F +VQ  Y P G+ A A   DG   VD+
Sbjct: 171 KNMLQAADNLLPRWNFSLVQGSYNPGGVGASAGTHDGGGVVDI 213


>UniRef50_Q1HAY3 Cluster: Polyprotein; n=1; Helicobasidium mompa
            endornavirus 1-670|Rep: Polyprotein - Helicobasidium
            mompa endornavirus 1-670
          Length = 5373

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -2

Query: 345  SGLNAHADGNHRVDLLQHFTDVIVDARRFAVLNQWERLL 229
            +G +AH DG H    ++HF + + DA   A L +WERL+
Sbjct: 3165 AGRDAH-DGAHLQAAVKHFEEEVEDALDTAGLTEWERLV 3202


>UniRef50_A5NQH7 Cluster: Putative PAS/PAC sensor protein; n=2;
           Alphaproteobacteria|Rep: Putative PAS/PAC sensor protein
           - Methylobacterium sp. 4-46
          Length = 607

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 26/86 (30%), Positives = 43/86 (50%)
 Frame = +2

Query: 59  RVWRVVSPSPYSSGIPIRIVRKRYVVHRAGRDRYARLKIGSCTFDEAVKMIDAGDSIKSL 238
           R+W  +SP   ++G P     +  V+  A  D  A+L++     ++A KM   G     +
Sbjct: 491 RIW--LSPEVRAAGGPEPDGGQETVILYA-LDTTAQLQLQQ-QINQAQKMEMVGQLAGGI 546

Query: 239 SHWFSTAKRRASTITSVKCWSKSTRW 316
           +H F+ + RR+S  T   CWS + RW
Sbjct: 547 AHDFNKSCRRSSA-TRTCCWSATARW 571


>UniRef50_Q4PGQ1 Cluster: Putative uncharacterized protein; n=1;
            Ustilago maydis|Rep: Putative uncharacterized protein -
            Ustilago maydis (Smut fungus)
          Length = 1614

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = -2

Query: 279  IVDARRFAVLNQWERLLMESPASIILTASSKVQLPIFKRA*RSRPALCTTYRLRTIL 109
            +V   R  V N    LL E+ AS+ L   +K+Q  I +    +R  LC  +RLRTIL
Sbjct: 1504 LVSLARALVKNSKIILLDEATASVDLETDAKIQQTI-REEFANRTILCIAHRLRTIL 1559


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,160,901
Number of Sequences: 1657284
Number of extensions: 13145069
Number of successful extensions: 37463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37444
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)