Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060060.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    31   0.16 
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    26   4.4  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    26   4.4  
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    26   4.4  
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    26   4.4  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    25   7.7  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    25   7.7  

>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +3

Query: 318 SRQRARSNRTADILFEQF*TRNFSRHVGLLANYFGPL*TFHEKRKTAA 461
           S + A SN   D LF    TR+    V LLA     +  F+EKRKT A
Sbjct: 437 SIRTAVSNTQVDQLFHVRHTRSLEHSVSLLAEMTKQINLFYEKRKTLA 484


>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
 Frame = -3

Query: 566 GGHASMHYSVH-------ISYHTKFIDHHPTASL 486
           GGH S  Y++        ++Y+ KF+D H  A L
Sbjct: 69  GGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAEL 102


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 9   AKLIIYNYYAKYNEVHDVYGESYH 80
           +KLIIYN   ++  +H  +G++ H
Sbjct: 40  SKLIIYNKVCQFGRIHIFHGKNRH 63


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
 Frame = -3

Query: 566 GGHASMHYSVH-------ISYHTKFIDHHPTASL 486
           GGH S  Y++        ++Y+ KF+D H  A L
Sbjct: 69  GGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAEL 102


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 501 SDSVAIRVEHVGDVQQFSVSHEMFKAAQNNLQAAQHVL 388
           +D+V      +G  ++  VS+    AAQN+ +AAQ+VL
Sbjct: 33  NDAVLASESQMGIYKEPCVSYSAGGAAQNSCRAAQYVL 70


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 274 DDNVRKVLEQIDAVVPVSV-RVQTGRQIFSLNNFEREISQDMLGCLQIILGRFEHFMRNG 450
           D  + K+   I+     SV R       F+ NN     +Q++L C++I+LG+ E      
Sbjct: 85  DSEINKITHIINFAAESSVDRSFIDPLYFTKNNILS--TQNLLECVRILLGKKEELRNRL 142

Query: 451 KLLHIA 468
             +H++
Sbjct: 143 NFVHVS 148


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 53  ARRVWRVVSPSPYSSGIPIRIVRKRYVVHRAGRDRYAR 166
           A R W   +P+P S  +P   +   +V+ +  RD+Y R
Sbjct: 84  ANRYW---NPNPLSHPLPTNALSDEHVMEKYIRDKYER 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,659
Number of Sequences: 5004
Number of extensions: 56762
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)