Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060060.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151     31   0.85 
05_07_0012 + 27041475-27042476                                         30   2.0  
05_05_0173 + 22956927-22958615                                         29   2.6  
08_01_0339 - 3003626-3004070,3004467-3004636,3004907-3005020,300...    29   4.5  
08_02_0894 + 22346027-22347925                                         28   6.0  
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     28   7.9  

>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
          Length = 124

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 104 PIRIVRKRYVVHRAGRDRYARLKIGSCTFDEAVKMIDAG 220
           P R V+KR + H+  R     +K     +DE VK+ DAG
Sbjct: 6   PHRKVKKRRLSHKTARRGKFLVKADDAVYDELVKLADAG 44


>05_07_0012 + 27041475-27042476
          Length = 333

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 12  KLIIYNYYAKYNEVHDVYGESYHH 83
           K+I+YN   K+ EV D + ++Y H
Sbjct: 210 KMIVYNIATKFREVSDYFRQNYQH 233


>05_05_0173 + 22956927-22958615
          Length = 562

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 318 NHRVDLLQHFTDVIVDARRFAVLNQWERLLMESP 217
           + R+DLLQHF D+    R  + ++   R++  SP
Sbjct: 436 SERIDLLQHFVDLASTERLASAVSDLRRMVRPSP 469


>08_01_0339 -
           3003626-3004070,3004467-3004636,3004907-3005020,
           3005592-3005704,3005848-3005926
          Length = 306

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 179 SCTFDEAVKMIDAGDSIKSLSHWFSTAKRRASTI 280
           S T++E +   D G S    S  F+TAK++AST+
Sbjct: 174 SGTWEEDLGTTDGGSSRNYFSSMFNTAKQKASTL 207


>08_02_0894 + 22346027-22347925
          Length = 632

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +1

Query: 247 VQHGETTGIDDN-VRKVLEQIDAVVPVSVRVQTGRQIFSLNNFER---EISQDMLGCLQI 414
           V  G ++GI  + +R+     +A    + RVQ+G  +      E     IS+ ++   + 
Sbjct: 524 VSGGFSSGISKSALRERFRSFNAAFEEAHRVQSGWCVPDTQLREELRISISEKLVPAYRS 583

Query: 415 ILGRFEHFMRNGK 453
            LGRF H + NGK
Sbjct: 584 FLGRFRHHIENGK 596


>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -2

Query: 441  HEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSG-LNA--HADGNHRVDLLQHFTDVIVD 271
            H +  A   NL    +   N  F+ +  EY+P+G L A  H++G  ++  L+   D+++D
Sbjct: 846  HVLRMARHRNLIKILNTCSNLDFRALVLEYMPNGSLEALLHSEGRMQLGFLER-VDIMLD 904


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,982,755
Number of Sequences: 37544
Number of extensions: 367843
Number of successful extensions: 972
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)