Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060060.seq
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40215-1|AAC50718.1|  478|Homo sapiens synapsin IIb protein.           31   3.8  
BC051307-1|AAH51307.1|  582|Homo sapiens synapsin II protein.          31   3.8  
AF077737-1|AAC33789.1|  478|Homo sapiens synapsin IIb protein.         31   3.8  
AF077671-1|AAC28368.1|  582|Homo sapiens synapsin IIa protein.         31   3.8  
AB209088-1|BAD92325.1|  514|Homo sapiens synapsin II isoform IIb...    31   3.8  

>U40215-1|AAC50718.1|  478|Homo sapiens synapsin IIb protein.
          Length = 478

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 393 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVIVDARRFAVL 250
           VL ++  K+ Q E+    L AHADG + VD+  L++ T V+   R   VL
Sbjct: 135 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVL 184


>BC051307-1|AAH51307.1|  582|Homo sapiens synapsin II protein.
          Length = 582

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 393 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVIVDARRFAVL 250
           VL ++  K+ Q E+    L AHADG + VD+  L++ T V+   R   VL
Sbjct: 135 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVL 184


>AF077737-1|AAC33789.1|  478|Homo sapiens synapsin IIb protein.
          Length = 478

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 393 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVIVDARRFAVL 250
           VL ++  K+ Q E+    L AHADG + VD+  L++ T V+   R   VL
Sbjct: 135 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVL 184


>AF077671-1|AAC28368.1|  582|Homo sapiens synapsin IIa protein.
          Length = 582

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 393 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVIVDARRFAVL 250
           VL ++  K+ Q E+    L AHADG + VD+  L++ T V+   R   VL
Sbjct: 135 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVL 184


>AB209088-1|BAD92325.1|  514|Homo sapiens synapsin II isoform IIb
           variant protein.
          Length = 514

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 393 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVIVDARRFAVL 250
           VL ++  K+ Q E+    L AHADG + VD+  L++ T V+   R   VL
Sbjct: 171 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVL 220


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,555,743
Number of Sequences: 237096
Number of extensions: 1840720
Number of successful extensions: 3787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3787
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)