Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060057.seq
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 28 1.5
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 28 1.5
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 27 2.6
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 27 2.6
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 27 3.4
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 26 4.5
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo... 26 4.5
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom... 26 5.9
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 5.9
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.9
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 5.9
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 7.8
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.8
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||... 25 7.8
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 205 KSEDNALSFKEAFKAFSNLEIPSPMEKPSRS 297
K ED + S+K FK+ S+ + S EK S S
Sbjct: 114 KEEDESSSYKNEFKSSSSASVSSNFEKTSGS 144
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 619 FPLPVSSKALPVRTSIFARVC 557
FPLP S LP+R+ F ++C
Sbjct: 89 FPLPFSRSILPIRSLAFLKLC 109
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 399 LGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITHTLQN 524
L +DDY+KF +DL K + + + + C Q I +QN
Sbjct: 340 LNVDDYRKFREDLWKKRHGKRKVY--QCSNCSQTFINEDIQN 379
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 185 HPMERPVKARITPYLSRKPSRRFQIWRSQ 271
H +E +++RI YLS +RR IW S+
Sbjct: 185 HKLENYLESRIVYYLSNLRTRRRSIWLSR 213
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 85 RKMSTEAQNTDAAVE-QVTQEVKDVKLENGNAPGASNGTSSKSEDNALSFKEAFKAFSNL 261
RK ST +++ V + +QE D ++ + + AS ++ A+ KEAF A N+
Sbjct: 258 RKWSTNSESKIKRVALETSQEESDREIADRRS--ASEQAHEADDEKAIKRKEAFDALLNI 315
Query: 262 E 264
E
Sbjct: 316 E 316
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 139 QEVKDVKLENGNAPGASNGTSSKS-EDNALSFKEAFKAFSNLEIPSPMEKPS 291
+ + D +E+ N + N ++ ++ ED S + A+ S IPSP ++P+
Sbjct: 136 RSMSDESMESYNDEKSVNASALRTTEDRLRSMEMAYAQLSAKVIPSPSKRPA 187
>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 566
Score = 26.2 bits (55), Expect = 4.5
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = +1
Query: 58 SHKYIKHL*RKMSTEA-QNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALSFK 234
S K K L + S A Q+ A E T+E D K++ G A G S ++ ++ K
Sbjct: 60 SRKKEKELTSEDSDAANQSPSGAPESQTEEESDRKID-GTGSSAEGGDGSGTDSISVIKK 118
Query: 235 EAFKAFSNLEIPSPMEKPSRSRKATNG*NKPKL 333
FK+ + SRS A + KL
Sbjct: 119 SFFKSGRKKKDVPKSRNVSRSNGADTSVQREKL 151
>SPBC4F6.15c |swi10|rad23|DNA repair
endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 208 SEDNALSFKEAFKAFSNLEIPSPMEKPS 291
S + A + E +KA+ N+ MEKPS
Sbjct: 143 SSEEAARYLETYKAYENMSPALIMEKPS 170
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 338 WKENNNNGHGYSLQ 379
WKE NNNG G+ ++
Sbjct: 640 WKEANNNGRGWKIK 653
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 85 RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALSFK 234
R+ T A N ++ ++ TQ KLEN S +SSKS D A S K
Sbjct: 862 RETRTSASN-ESDPKKSTQRDSSKKLENSTVVSGSPSSSSKS-DAAKSIK 909
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 163 ENGNAPGASNGTSSKSEDNALSFKEAFKAFSNLEIPSPMEKPS 291
+N ++ +S+ + S L F+ +L+ PSP KPS
Sbjct: 130 QNPSSSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPSPRRKPS 172
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 112 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALSFKE 237
T A+ + DV+ N NG +S+S DNA KE
Sbjct: 405 TMTAIRYIDLNYVDVQYTNLRGGAYGNGNNSESSDNAQLKKE 446
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +1
Query: 85 RKMSTEAQNT--DAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALSFKEAFKAFSN 258
+K + +NT D V + T K KLE +A + + SSK E + K K F
Sbjct: 46 QKQRQKQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSSKKEPVVVPKKGTPKIFQE 105
Query: 259 LEIPSPMEKPSRSR 300
++ P + +
Sbjct: 106 NHKVKKVKSPKKEK 119
>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/43 (23%), Positives = 20/43 (46%)
Frame = +2
Query: 182 EHPMERPVKARITPYLSRKPSRRFQIWRSQVRWKSHHALAKRQ 310
E E PV + Y+++ P + + W+ + WK + R+
Sbjct: 112 ESDKETPVMLNKSHYVAKTPEIQDEPWKPKFDWKESEPITDRK 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,850
Number of Sequences: 5004
Number of extensions: 51337
Number of successful extensions: 172
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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