Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060057.seq
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 33 0.21
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 30 2.0
06_03_1167 + 28111923-28113218 29 4.6
01_07_0162 + 41576824-41577438 29 4.6
05_04_0326 + 20294334-20295007,20295210-20295291,20295391-202955... 28 6.1
02_02_0671 - 12811102-12811608 28 6.1
11_01_0710 - 5830475-5830595,5831498-5834124 28 8.0
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 28 8.0
06_01_0136 + 1043888-1044487 28 8.0
05_07_0277 - 28909502-28909621,28910053-28910583,28910629-289107... 28 8.0
04_03_1000 + 21604164-21605387,21605467-21605817 28 8.0
>05_07_0247 + 28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 118 AAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALSFKEAFKAFSNLE 264
AAVE+ T E ++ +E A A+ + E SFKE+FK+ SNL+
Sbjct: 1225 AAVERATAEARERAIEKAKAEKAAAEARERRERYRSSFKESFKS-SNLD 1272
>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = +2
Query: 194 ERPVKARITPYLSRKPSRRFQIWRSQVRWKSHHALAKRQMDETSQSYXWKENNNNGHGYS 373
E V++ P S Q+ R V H + K+ + + + +NN GY+
Sbjct: 1229 ESKVESHSAPLRSNASKLTAQLKRGNVENGGQHGITKQAISNPADTSSPVRKDNNSTGYA 1288
Query: 374 LQKTQIGKTRHRRLPE 421
L++ + K + RL E
Sbjct: 1289 LKEARDLKHKANRLKE 1304
>06_03_1167 + 28111923-28113218
Length = 431
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/78 (28%), Positives = 32/78 (41%)
Frame = +2
Query: 338 WKENNNNGHGYSLQKTQIGKTRHRRLPEVSR*SREEQKSGT*RN*EEVDNLRPTGNYSHV 517
W +N S Q T + + R R + + T + VD L+P G S
Sbjct: 234 WPSSNTRQTLDSRQGTAASRAKARSPSPRPRRQSNGKATDTRGGNKVVDELKPKGASSSQ 293
Query: 518 TKSPAAAAAVDRLTDTSK 571
+ S AAAA R+ +SK
Sbjct: 294 SGSAAAAATAKRMAGSSK 311
>01_07_0162 + 41576824-41577438
Length = 204
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 505 LLTRYKITGSRSGRRSIDRHEQIYW-FAQAALSMKPAKGRXSPAGKT*STGPATS 666
++ Y+IT R RR+ D E +W S +P + SPA PA +
Sbjct: 142 MMAEYEITDPRCYRRADDGEEDDFWVLCHVRKSSRPQAAKISPAKPARRRKPAAA 196
>05_04_0326 +
20294334-20295007,20295210-20295291,20295391-20295502,
20295602-20295723
Length = 329
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 197 RPVKARITPYLSRKPSRRFQIWRSQVRWKSHHALAKRQMDETSQSYXWKENNNNGHGYSL 376
R ++ +I + R P ++ + K L K Q+ + W E++ +GHG+SL
Sbjct: 94 RTLRRKIREMMDRVPETAEITDPAERKAKMLELLTKYQLVVEEEDPNWPEDDEDGHGFSL 153
>02_02_0671 - 12811102-12811608
Length = 168
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 211 EDNALSFKEAFKAFSNLEIPSPMEKPSRSRK 303
ED+ALS +A + S +E+P P+ K +R R+
Sbjct: 7 EDHALSNTQAHMSGSGVEMPIPLVKRNRMRR 37
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 334 ITLACFIHLSLCESVMAFPSDLGS-PNLKT 248
+T +HLS CES+ A P LG+ +LKT
Sbjct: 811 LTSLLSLHLSYCESISALPEWLGNLTSLKT 840
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 88 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNG 195
++S EAQ + AVE + K K N N GA G
Sbjct: 57 RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKG 92
>06_01_0136 + 1043888-1044487
Length = 199
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 594 RCLCEPVYLLVSVNRSTAAAAAGDFVTC 511
R C VY +V+ N+S AAAA+ + C
Sbjct: 170 RVSCSDVYFVVADNKSAAAAASSTPIDC 197
>05_07_0277 -
28909502-28909621,28910053-28910583,28910629-28910721,
28910758-28911501
Length = 495
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -1
Query: 409 SMPSFTDLSFLK*--IAVSVVVIFFPXITLACFIHLSLCESVMAFPSDLGS 263
S+ F DL++L +SVV F +T + LS CE ++ SDLG+
Sbjct: 120 SIKDFHDLNYLNLSYTNISVVPNFLGVVTSLEVLDLSHCEKLVEIHSDLGN 170
>04_03_1000 + 21604164-21605387,21605467-21605817
Length = 524
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 491 RPTGNYSHVTKSPAAAAAVDRLTDTSK 571
+P GN + KS AAAA VD T S+
Sbjct: 455 KPAGNNNMAAKSAAAAAPVDEQTSKSR 481
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,547,311
Number of Sequences: 37544
Number of extensions: 351800
Number of successful extensions: 1188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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