Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060057.seq
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-6|AAB42320.1| 180|Caenorhabditis elegans Hypothetical pr... 54 7e-08
Z68760-15|CAL44969.1| 462|Caenorhabditis elegans Hypothetical p... 30 1.8
Z68760-13|CAD30434.1| 423|Caenorhabditis elegans Hypothetical p... 30 1.8
Z68760-12|CAD27623.1| 436|Caenorhabditis elegans Hypothetical p... 30 1.8
Z68760-11|CAA92997.2| 438|Caenorhabditis elegans Hypothetical p... 30 1.8
X68070-1|CAA48207.1| 438|Caenorhabditis elegans Lin-3 protein. 30 1.8
AL032641-9|CAL44964.1| 462|Caenorhabditis elegans Hypothetical ... 30 1.8
AL032641-7|CAD30455.1| 423|Caenorhabditis elegans Hypothetical ... 30 1.8
AL032641-6|CAD27613.1| 436|Caenorhabditis elegans Hypothetical ... 30 1.8
AL032641-5|CAA21649.2| 438|Caenorhabditis elegans Hypothetical ... 30 1.8
Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z68159-6|CAA92287.5| 485|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 29 4.1
U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical p... 29 4.1
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 29 4.1
Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical pr... 28 7.2
U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical ... 28 7.2
AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical ... 28 7.2
AF040643-1|AAB94960.1| 998|Caenorhabditis elegans Hypothetical ... 27 9.6
>U88308-6|AAB42320.1| 180|Caenorhabditis elegans Hypothetical
protein C32E8.3 protein.
Length = 180
Score = 54.4 bits (125), Expect = 7e-08
Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Frame = +3
Query: 255 KFGDPKSDGKAITLSQSDKWMKQAKVIXGKKITTTDTAIHFKKLKSVK--LGIDDYQKFL 428
KFG + +T DKW+K A V+ K IT T T I F K+ K D+ +K L
Sbjct: 23 KFG--AATATEMTGKNFDKWLKDAGVLDNKAITGTMTGIAFSKVTGPKKKATFDETKKVL 80
Query: 429 ----DDLAKNKKV----ELDEIKKKLTTCGQPGITHTLQNHRQPQRP*ID*QTRANILVR 584
+D A+ K ELD I +KL P + + + + T+ +
Sbjct: 81 AFVAEDRARQSKKPIQDELDAITEKLAKLEAPSVGGAAKANAAGVYSRLTDHTKYTGAHK 140
Query: 585 TGSAFDETGKGKGIAGRKDLVDGSGYVTGYQH 680
FD GKGKG +GR D + +GYV Y++
Sbjct: 141 --ERFDAEGKGKGKSGRADTTENTGYVGAYKN 170
>Z68760-15|CAL44969.1| 462|Caenorhabditis elegans Hypothetical
protein F36H1.4d protein.
Length = 462
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +3
Query: 315 MKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 494
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 362 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 421
Query: 495 QPGITHTLQN 524
P HT+ N
Sbjct: 422 PP--AHTVIN 429
>Z68760-13|CAD30434.1| 423|Caenorhabditis elegans Hypothetical
protein F36H1.4c protein.
Length = 423
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +3
Query: 315 MKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 494
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 323 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 382
Query: 495 QPGITHTLQN 524
P HT+ N
Sbjct: 383 PP--AHTVIN 390
>Z68760-12|CAD27623.1| 436|Caenorhabditis elegans Hypothetical
protein F36H1.4b protein.
Length = 436
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +3
Query: 315 MKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 494
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 336 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 395
Query: 495 QPGITHTLQN 524
P HT+ N
Sbjct: 396 PP--AHTVIN 403
>Z68760-11|CAA92997.2| 438|Caenorhabditis elegans Hypothetical
protein F36H1.4a protein.
Length = 438
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +3
Query: 315 MKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 494
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 338 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 397
Query: 495 QPGITHTLQN 524
P HT+ N
Sbjct: 398 PP--AHTVIN 405
>X68070-1|CAA48207.1| 438|Caenorhabditis elegans Lin-3 protein.
Length = 438
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +3
Query: 315 MKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 494
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 338 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 397
Query: 495 QPGITHTLQN 524
P HT+ N
Sbjct: 398 PP--AHTVIN 405
>AL032641-9|CAL44964.1| 462|Caenorhabditis elegans Hypothetical
protein F36H1.4d protein.
Length = 462
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +3
Query: 315 MKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 494
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 362 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 421
Query: 495 QPGITHTLQN 524
P HT+ N
Sbjct: 422 PP--AHTVIN 429
>AL032641-7|CAD30455.1| 423|Caenorhabditis elegans Hypothetical
protein F36H1.4c protein.
Length = 423
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +3
Query: 315 MKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 494
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 323 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 382
Query: 495 QPGITHTLQN 524
P HT+ N
Sbjct: 383 PP--AHTVIN 390
>AL032641-6|CAD27613.1| 436|Caenorhabditis elegans Hypothetical
protein F36H1.4b protein.
Length = 436
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +3
Query: 315 MKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 494
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 336 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 395
Query: 495 QPGITHTLQN 524
P HT+ N
Sbjct: 396 PP--AHTVIN 403
>AL032641-5|CAA21649.2| 438|Caenorhabditis elegans Hypothetical
protein F36H1.4a protein.
Length = 438
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +3
Query: 315 MKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 494
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 338 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 397
Query: 495 QPGITHTLQN 524
P HT+ N
Sbjct: 398 PP--AHTVIN 405
>Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical
protein M04C3.2 protein.
Length = 606
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/71 (22%), Positives = 30/71 (42%)
Frame = +3
Query: 264 DPKSDGKAITLSQSDKWMKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAK 443
D + A + + ++KQ + + +I F K+ K +DY+K + + K
Sbjct: 418 DDEEKSTAKLVKNIEGFLKQVTLRFPRSCKLYKISIQFTKISIFKFSANDYEKHITNAKK 477
Query: 444 NKKVELDEIKK 476
KK I+K
Sbjct: 478 EKKENEPNIRK 488
>Z68159-6|CAA92287.5| 485|Caenorhabditis elegans Hypothetical
protein C33D9.6 protein.
Length = 485
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 85 RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSE--DNALSFKEAFK-AFS 255
++ A+ + +E+ E+K++ E N +K E D A F++ K F+
Sbjct: 290 KRQEINAEQIERLIEERNSEIKNLIREQSKEIHEKNVKIAKFEIKDYANIFRQISKNIFT 349
Query: 256 NLEIPSPMEKPSRSR 300
N E P P +P + R
Sbjct: 350 NKEAPGPSGRPKKRR 364
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +3
Query: 315 MKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKL 482
+K+ K + G++ + D +H +KL S+ D+Q+ + DL++++ V I KK+
Sbjct: 460 LKELKAVYGQEEDSLD--LH-EKLLSLPFDQYDWQEMIKDLSRHRSVVYQLINKKM 512
>U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical
protein C50F2.8 protein.
Length = 479
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +1
Query: 88 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGA----SNGTSSKSEDNALSFKE 237
++ + A+N + + +++++++ +NG A SNGTSS ++D F++
Sbjct: 9 QLRSNAENLSRCLHVLLEKIENIEKKNGKEQDADSTKSNGTSSSNKDGKEKFEQ 62
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +3
Query: 315 MKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKL 482
+K+ K + G++ + D +H +KL S+ D+Q+ + DL++++ V I KK+
Sbjct: 460 LKELKAVYGQEEDSLD--LH-EKLLSLPFDQYDWQEMIKDLSRHRSVVYQLINKKM 512
>Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical
protein R06B9.1 protein.
Length = 423
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 193 GTSSKSEDNALSFKEAFKAFSNLEIPSPMEKPS 291
GT ++E+N F + F+NL I +P PS
Sbjct: 390 GTELRAEENEKPFAPKYPVFNNLPIYNPTAPPS 422
>U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical
protein F57F4.1 protein.
Length = 461
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 240 GFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF 142
GFL R + LA+T + C RV V +D ++F
Sbjct: 327 GFLMRKALELAYTNAKLYCKGRVAVRSMDHIEF 359
>AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical
protein ZK484.4a protein.
Length = 919
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 451 KWNLTKLRRS*QLAANRELLTRYKITGSRSGRRSIDRHEQIYW 579
KW +L+R QL RE L RY+ +G R+ +++ +I W
Sbjct: 724 KWTDRQLKR--QLGLTREDLNRYREAMLTTGERNRNKNVKINW 764
>AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical
protein ZK484.4b protein.
Length = 873
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 451 KWNLTKLRRS*QLAANRELLTRYKITGSRSGRRSIDRHEQIYW 579
KW +L+R QL RE L RY+ +G R+ +++ +I W
Sbjct: 678 KWTDRQLKR--QLGLTREDLNRYREAMLTTGERNRNKNVKINW 718
>AF040643-1|AAB94960.1| 998|Caenorhabditis elegans Hypothetical
protein F14D2.6 protein.
Length = 998
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +3
Query: 279 GKAITLSQSDKWMKQAKVIXGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVE 458
GK++T KW K V+ G + DT LK +LG Y K + L N K+E
Sbjct: 57 GKSVTSETMKKWPKSCDVVCGNLYFSADT-----DLKVGQLG--KYFKSIRQLIGNIKIE 109
Query: 459 LDEI 470
+
Sbjct: 110 YSSL 113
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,686,066
Number of Sequences: 27780
Number of extensions: 295885
Number of successful extensions: 1146
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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