Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060057.seq
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    26   0.39 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.1  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.4  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 203 VKARITPYLSRKPSRRFQIWRSQVRWKSHHALAKRQMDETSQSY 334
           V+ R  P    KPS+RF   R    +  HH  + R+     Q+Y
Sbjct: 413 VRRRYQPAFRCKPSQRFASGRYYSAYSLHHVRSSRE-SSCEQTY 455


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -2

Query: 606 FHRKRCLCEPVYLLVSVNRSTAAAAAGDFVTCE*FPVGRKLSTSS*F 466
           F     L   +Y+L+++ R +A     +F TC   P    +S  + F
Sbjct: 89  FSSPTILISYIYILMAILRMSADGGCRNFSTCSSHPTAAFISYGTLF 135


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 576 VYLLVSVNRSTAAAAAGDFVTCE*FPVGRKLSTSS*F 466
           +Y+L+++ R +A     +F TC   P    +S  + F
Sbjct: 98  IYILMAILRMSADGGCRNFSTCSSHPTAAFISYGTLF 134


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 85  RKMSTEAQNTDAAVEQ-VTQEVKDVKLENGNAP 180
           RK+  E + TD  + Q + ++V D +L NG  P
Sbjct: 382 RKLDEEMKRTDELLYQMIPKQVAD-RLRNGENP 413


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 597 KRCLCEPVYLLVSVNRSTAAA 535
           +RCLCE +Y  + ++    AA
Sbjct: 324 RRCLCEYLYKQLELHTEDRAA 344


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 110 FCASVDIFLYKCLMYLCDDIIYYASESVADRRL 12
           +  S+D++L  C + +   ++ YA+     +R+
Sbjct: 279 YVKSIDVYLGTCFVMVFASLLEYATVGYMAKRI 311


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 110 FCASVDIFLYKCLMYLCDDIIYYASESVADRRL 12
           +  S+D++L  C + +   ++ YA+     +R+
Sbjct: 279 YVKSIDVYLGTCFVMVFASLLEYATVGYMAKRI 311


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 110 FCASVDIFLYKCLMYLCDDIIYYASESVADRRL 12
           +  S+D++L  C + +   ++ YA+     +R+
Sbjct: 218 YVKSIDVYLGTCFVMVFASLLEYATVGYMAKRI 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,994
Number of Sequences: 438
Number of extensions: 3558
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)