Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060055.seq
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 34 0.094
11_02_0111 + 8396304-8396378,8396697-8397113,8397220-8397483,839... 31 0.87
04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231 30 2.0
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 29 2.7
08_01_0101 + 725972-726200,726407-726675,726927-727049,727742-72... 29 3.5
05_01_0320 - 2524700-2524810,2525075-2525183,2525607-2525683,252... 29 3.5
06_01_0881 + 6754600-6754681,6754742-6755284,6755461-6755523,675... 29 4.7
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445... 29 4.7
01_06_1694 + 39246262-39247320,39247464-39247590,39248638-392487... 29 4.7
07_03_0206 + 15177873-15177921,15178047-15178174,15178431-151785... 28 6.2
02_02_0327 - 8983983-8985878 28 6.2
03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477 28 8.1
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 34.3 bits (75), Expect = 0.094
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 510 PTLDVIFVHGLYGSLSNTWRQGDWK 584
P +DV+FVHGL G N+WR D K
Sbjct: 922 PLMDVVFVHGLRGGPFNSWRIADDK 946
>11_02_0111 +
8396304-8396378,8396697-8397113,8397220-8397483,
8398237-8398608
Length = 375
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 300 RQTAPVFHCGATVVRFELMEDGHRFLASIGR 392
R+ VFH G T FEL+ G R L + GR
Sbjct: 224 RKNKDVFHAGGTTTLFELLSQGLRTLVAEGR 254
>04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231
Length = 344
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 376 LHRLVAVRLPQIKARPVKTKLRVPGTDHLDPVPRVECVVLHEPPFLPS 519
L L A+++P + P +++PG L P+P ++ L P LP+
Sbjct: 104 LQPLPAIQIPGLPPLPQLPTIQIPGLPTLQPLPTIQIPGLPPLPQLPT 151
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +1
Query: 385 LVAVRLPQIKARPVKTKLRVPGTDHLDPVPRVECVVLHEPPFLPSTSSSSMGYTDP*ATL 564
L +++P + P +++PG L P+P ++ L P LP+ + P T+
Sbjct: 79 LPTIQIPGLPPLPQLPTIQIPGLPPLQPLPAIQIPGLPPLPQLPTIQIPGLPTLQPLPTI 138
Query: 565 GVKAI 579
+ +
Sbjct: 139 QIPGL 143
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -2
Query: 628 WFIRVFNSGSLLYVGFQSP*RQV---LLKDPYSPWTKMTSRVGKAARAGP 488
WF+ + L++ F SP +Q LL PY + K T V K R+GP
Sbjct: 54 WFVAGDDHHELIFDPFISPLKQQKPELLGLPYGSYEKRTIHVSKYLRSGP 103
>08_01_0101 +
725972-726200,726407-726675,726927-727049,727742-728248
Length = 375
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 482 SAWSCTSRLSYPRRHLRPWAIRILKQHLASRRLETNIQKR 601
+A + ++ +PRRH RPW+++ ++H S R+ + + R
Sbjct: 286 AATAAAAKRRHPRRHRRPWSLQ-RRRHSTSSRVCSRVCHR 324
>05_01_0320 -
2524700-2524810,2525075-2525183,2525607-2525683,
2525795-2525873,2526058-2526147,2526779-2526903,
2527288-2527468,2527712-2527905,2528008-2528411,
2528519-2528605,2528802-2529582
Length = 745
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 229 ITNAWLKQEAASREILPQNGGHGNVRLHPYFIAVLR 336
I++AWL A +IL + GN+R +F+AVLR
Sbjct: 290 ISDAWLANPALPEDILKE-AVPGNIRRAEHFLAVLR 324
>06_01_0881 +
6754600-6754681,6754742-6755284,6755461-6755523,
6755653-6755666
Length = 233
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 385 LVAVRLPQIKARPVKTKLRVPGTDHLDPVPRVECVVLHE-PPFLPSTS 525
L +++P + +++PG L P+P ++ L PP LPS S
Sbjct: 46 LPTIQIPCLPPLQPLPTIQIPGLPQLQPLPTIQIPELPPLPPLLPSVS 93
>02_05_1312 +
35642687-35642923,35643712-35643831,35644468-35644534,
35644673-35644694,35645053-35645152,35645282-35645414,
35645483-35645517,35645708-35646409,35646789-35647121,
35647337-35647601,35647665-35647999,35648105-35648177,
35648271-35648356,35648479-35648598,35648674-35648741,
35648825-35648882
Length = 917
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 521 RHLRPWAIRILKQHLASRRLETNIQ 595
R LRPW I + ++ +A + LE IQ
Sbjct: 202 RLLRPWLIELRQEQMAEKELEAKIQ 226
>01_06_1694 +
39246262-39247320,39247464-39247590,39248638-39248783,
39248898-39248965,39249055-39249157,39249616-39249741
Length = 542
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 294 RQRQTAPVFHCGATVVRFELMEDGHRFLASIGRRQTAANQSETSQNEAQGAGDRPPGP 467
+Q TA V + T R + + HR L ++ A+ E EA AG+ PP P
Sbjct: 194 KQSDTAAVLYSSGTTGRVKAVAITHRNLIAL--MSLHADNREKVAREAAEAGEEPPPP 249
>07_03_0206 +
15177873-15177921,15178047-15178174,15178431-15178521,
15178836-15179311
Length = 247
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 348 ELMEDGHRFLASIGRRQTAANQSETSQNEAQGAGDRPPGP--RASRGVRGPARAAFPTLD 521
E++ DG S+G + +SE S + AGD PP P R SR R AA ++D
Sbjct: 90 EIVVDG----GSLGDTSFSETRSEASGSMDITAGDSPPSPDSRRSRRHRSRGSAATSSMD 145
Query: 522 VIFVHG 539
G
Sbjct: 146 CTAADG 151
>02_02_0327 - 8983983-8985878
Length = 631
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 441 GAGDRPPGPRASRGVRGPARAAFPTLDVIFVHGLYGSLSNTWRQGD 578
GAGD P R +RG G P +D VHG + +S+ QGD
Sbjct: 504 GAGDTPC-ERLARGKNGLCVYHNPQVDENRVHGGFSVVSDALSQGD 548
>03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477
Length = 668
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/76 (31%), Positives = 32/76 (42%)
Frame = +3
Query: 270 NTSTKWRARQRQTAPVFHCGATVVRFELMEDGHRFLASIGRRQTAANQSETSQNEAQGAG 449
NT T+WR A FH G L++ G R LAS R+ + SE S + + A
Sbjct: 171 NTDTQWRYLVLGQA-CFHLGLIEDAMVLLQTGRR-LASAAFRRESVCLSEDSFSSSSPAA 228
Query: 450 DRPPGPRASRGVRGPA 497
P P + G A
Sbjct: 229 AVAPIPSGNTTKSGSA 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,188,985
Number of Sequences: 37544
Number of extensions: 380718
Number of successful extensions: 1348
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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