Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060055.seq
         (695 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY345586-1|AAR09143.1|  427|Anopheles gambiae myosuppressin rece...    25   1.7  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   1.7  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   3.0  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   5.3  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   7.0  

>AY345586-1|AAR09143.1|  427|Anopheles gambiae myosuppressin
           receptor protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 349 SLWRTVTVFLHRLVAVRLPQ 408
           S+W TVT+ + R +AV  PQ
Sbjct: 145 SIWLTVTLAIWRYIAVAYPQ 164


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 456 PPGPRASRGVRGP 494
           PPGP+ + G+RGP
Sbjct: 105 PPGPKGNPGLRGP 117


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 396  QTAANQSETSQNEAQGAGDRPPGPRASR 479
            + AA ++ T Q +A+     PP PR  R
Sbjct: 1062 RNAARRAATQQRQAERLPPPPPSPRTER 1089


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
 Frame = +3

Query: 435 AQGAGD-RP--PGPRASRGVRGP 494
           A G G+ RP  PGP+  RG  GP
Sbjct: 402 APGGGEGRPGAPGPKGPRGYEGP 424


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 274 LPQNGGHGNVRLHPYFIAVLRWCASSLWR 360
           LP +     + L  Y  A + WC+S+L R
Sbjct: 710 LPVSSSSDCMSLQHYLNAFVHWCSSNLLR 738


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,405
Number of Sequences: 2352
Number of extensions: 14390
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)