Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060055.seq
(695 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U20979-1|AAA76736.1| 938|Homo sapiens chromatin assembly factor... 34 0.42
BC067093-1|AAH67093.1| 956|Homo sapiens chromatin assembly fact... 34 0.42
BC052620-1|AAH52620.1| 411|Homo sapiens CHAF1A protein protein. 34 0.42
BC001705-1|AAH01705.1| 654|Homo sapiens serine active site cont... 34 0.42
AL590703-2|CAH70240.1| 531|Homo sapiens serine active site cont... 34 0.42
AL590703-1|CAH70239.1| 654|Homo sapiens serine active site cont... 34 0.42
AL135907-2|CAI42500.1| 531|Homo sapiens serine active site cont... 34 0.42
AL135907-1|CAI42499.1| 654|Homo sapiens serine active site cont... 34 0.42
AK027823-1|BAB55393.1| 654|Homo sapiens protein ( Homo sapiens ... 34 0.42
AF190465-2|AAF04291.1| 938|Homo sapiens chromatin assembly fact... 34 0.42
U84744-1|AAB87737.1| 1531|Homo sapiens Chediak-Higashi syndrome ... 31 5.2
U72192-1|AAB39697.1| 1475|Homo sapiens lysosomal trafficking reg... 31 5.2
U70064-1|AAB41533.1| 2001|Homo sapiens lysosomal trafficking reg... 31 5.2
U67615-1|AAB41309.1| 3801|Homo sapiens beige protein homolog pro... 31 5.2
AL390765-1|CAI14952.1| 3801|Homo sapiens lysosomal trafficking r... 31 5.2
AL121997-1|CAI18987.1| 3801|Homo sapiens lysosomal trafficking r... 31 5.2
M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collag... 30 9.1
D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain... 30 9.1
AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1... 30 9.1
AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1... 30 9.1
AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1... 30 9.1
AK172772-1|BAD18755.1| 127|Homo sapiens protein ( Homo sapiens ... 30 9.1
AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V coll... 30 9.1
>U20979-1|AAA76736.1| 938|Homo sapiens chromatin assembly factor-I
p150 subunit protein.
Length = 938
Score = 34.3 bits (75), Expect = 0.42
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 370 VFLHRLVAVRLPQIKARPV--KTKLRVPGTDHLDPVPRVECVVLHEPPFLPSTSSSSMGY 543
V L ++AVR PQIK+ P + K P ++ L+ P + V+ H PS++SS G
Sbjct: 222 VVLQDILAVRPPQIKSLPATPQGKNMTPESEVLESFPEEDSVLSHSSLSSPSSTSSPEGP 281
Query: 544 TDP 552
P
Sbjct: 282 PAP 284
>BC067093-1|AAH67093.1| 956|Homo sapiens chromatin assembly factor
1, subunit A (p150) protein.
Length = 956
Score = 34.3 bits (75), Expect = 0.42
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 370 VFLHRLVAVRLPQIKARPV--KTKLRVPGTDHLDPVPRVECVVLHEPPFLPSTSSSSMGY 543
V L ++AVR PQIK+ P + K P ++ L+ P + V+ H PS++SS G
Sbjct: 240 VVLQDILAVRPPQIKSLPATPQGKNMTPESEVLESFPEEDSVLSHSSLSSPSSTSSPEGP 299
Query: 544 TDP 552
P
Sbjct: 300 PAP 302
>BC052620-1|AAH52620.1| 411|Homo sapiens CHAF1A protein protein.
Length = 411
Score = 34.3 bits (75), Expect = 0.42
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 370 VFLHRLVAVRLPQIKARPV--KTKLRVPGTDHLDPVPRVECVVLHEPPFLPSTSSSSMGY 543
V L ++AVR PQIK+ P + K P ++ L+ P + V+ H PS++SS G
Sbjct: 222 VVLQDILAVRPPQIKSLPATPQGKNMTPESEVLESFPEEDSVLSHSSLSSPSSTSSPEGP 281
Query: 544 TDP 552
P
Sbjct: 282 PAP 284
>BC001705-1|AAH01705.1| 654|Homo sapiens serine active site
containing 1 protein.
Length = 654
Score = 34.3 bits (75), Expect = 0.42
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +3
Query: 315 VFHCGATVVRFELMEDGHRFLASIGRRQTAANQSETSQNEAQ-GAGDRPPGPRASRGVRG 491
+ G + E M+ H +S R A ET Q + Q G P R S+ ++
Sbjct: 335 IVRSGWVSIMAEAMKSPHIMESSHAARILANLDRETVQEKYQDGVYVLHPQYRTSQPIKA 394
Query: 492 PARAAFPTLDVIFVHGLYGSLSNTWRQGDWKPTYKSEP 605
DV+F+HGL G+ TWRQ D + +P
Sbjct: 395 ---------DVLFIHGLMGAAFKTWRQQDSEQAVIEKP 423
>AL590703-2|CAH70240.1| 531|Homo sapiens serine active site
containing 1 protein.
Length = 531
Score = 34.3 bits (75), Expect = 0.42
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +3
Query: 315 VFHCGATVVRFELMEDGHRFLASIGRRQTAANQSETSQNEAQ-GAGDRPPGPRASRGVRG 491
+ G + E M+ H +S R A ET Q + Q G P R S+ ++
Sbjct: 335 IVRSGWVSIMAEAMKSPHIMESSHAARILANLDRETVQEKYQDGVYVLHPQYRTSQPIKA 394
Query: 492 PARAAFPTLDVIFVHGLYGSLSNTWRQGDWKPTYKSEP 605
DV+F+HGL G+ TWRQ D + +P
Sbjct: 395 ---------DVLFIHGLMGAAFKTWRQQDSEQAVIEKP 423
>AL590703-1|CAH70239.1| 654|Homo sapiens serine active site
containing 1 protein.
Length = 654
Score = 34.3 bits (75), Expect = 0.42
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +3
Query: 315 VFHCGATVVRFELMEDGHRFLASIGRRQTAANQSETSQNEAQ-GAGDRPPGPRASRGVRG 491
+ G + E M+ H +S R A ET Q + Q G P R S+ ++
Sbjct: 335 IVRSGWVSIMAEAMKSPHIMESSHAARILANLDRETVQEKYQDGVYVLHPQYRTSQPIKA 394
Query: 492 PARAAFPTLDVIFVHGLYGSLSNTWRQGDWKPTYKSEP 605
DV+F+HGL G+ TWRQ D + +P
Sbjct: 395 ---------DVLFIHGLMGAAFKTWRQQDSEQAVIEKP 423
>AL135907-2|CAI42500.1| 531|Homo sapiens serine active site
containing 1 protein.
Length = 531
Score = 34.3 bits (75), Expect = 0.42
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +3
Query: 315 VFHCGATVVRFELMEDGHRFLASIGRRQTAANQSETSQNEAQ-GAGDRPPGPRASRGVRG 491
+ G + E M+ H +S R A ET Q + Q G P R S+ ++
Sbjct: 335 IVRSGWVSIMAEAMKSPHIMESSHAARILANLDRETVQEKYQDGVYVLHPQYRTSQPIKA 394
Query: 492 PARAAFPTLDVIFVHGLYGSLSNTWRQGDWKPTYKSEP 605
DV+F+HGL G+ TWRQ D + +P
Sbjct: 395 ---------DVLFIHGLMGAAFKTWRQQDSEQAVIEKP 423
>AL135907-1|CAI42499.1| 654|Homo sapiens serine active site
containing 1 protein.
Length = 654
Score = 34.3 bits (75), Expect = 0.42
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +3
Query: 315 VFHCGATVVRFELMEDGHRFLASIGRRQTAANQSETSQNEAQ-GAGDRPPGPRASRGVRG 491
+ G + E M+ H +S R A ET Q + Q G P R S+ ++
Sbjct: 335 IVRSGWVSIMAEAMKSPHIMESSHAARILANLDRETVQEKYQDGVYVLHPQYRTSQPIKA 394
Query: 492 PARAAFPTLDVIFVHGLYGSLSNTWRQGDWKPTYKSEP 605
DV+F+HGL G+ TWRQ D + +P
Sbjct: 395 ---------DVLFIHGLMGAAFKTWRQQDSEQAVIEKP 423
>AK027823-1|BAB55393.1| 654|Homo sapiens protein ( Homo sapiens
cDNA FLJ14917 fis, clone PLACE1007112. ).
Length = 654
Score = 34.3 bits (75), Expect = 0.42
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +3
Query: 315 VFHCGATVVRFELMEDGHRFLASIGRRQTAANQSETSQNEAQ-GAGDRPPGPRASRGVRG 491
+ G + E M+ H +S R A ET Q + Q G P R S+ ++
Sbjct: 335 IVRSGWVSIMAEAMKSPHIMESSHAARILANLDRETVQEKYQDGVYVLHPQYRTSQPIKA 394
Query: 492 PARAAFPTLDVIFVHGLYGSLSNTWRQGDWKPTYKSEP 605
DV+F+HGL G+ TWRQ D + +P
Sbjct: 395 ---------DVLFIHGLMGAAFKTWRQQDSEQAVIEKP 423
>AF190465-2|AAF04291.1| 938|Homo sapiens chromatin assembly
factor-I p150 subunit protein.
Length = 938
Score = 34.3 bits (75), Expect = 0.42
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 370 VFLHRLVAVRLPQIKARPV--KTKLRVPGTDHLDPVPRVECVVLHEPPFLPSTSSSSMGY 543
V L ++AVR PQIK+ P + K P ++ L+ P + V+ H PS++SS G
Sbjct: 222 VVLQDILAVRPPQIKSLPATPQGKNMTPESEVLESFPEEDSVLSHSSLSSPSSTSSPEGP 281
Query: 544 TDP 552
P
Sbjct: 282 PAP 284
>U84744-1|AAB87737.1| 1531|Homo sapiens Chediak-Higashi syndrome
protein short isoform protein.
Length = 1531
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 153 NVFRLYQQGQTIVNVISGFASTLCQDN 233
NVF L QQG T+ N++ GF S L QD+
Sbjct: 1306 NVFLLMQQG-TVKNLLGGFLSILTQDD 1331
>U72192-1|AAB39697.1| 1475|Homo sapiens lysosomal trafficking
regulator LYST protein.
Length = 1475
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 153 NVFRLYQQGQTIVNVISGFASTLCQDN 233
NVF L QQG T+ N++ GF S L QD+
Sbjct: 1306 NVFLLMQQG-TVKNLLGGFLSILTQDD 1331
>U70064-1|AAB41533.1| 2001|Homo sapiens lysosomal trafficking
regulator protein.
Length = 2001
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 153 NVFRLYQQGQTIVNVISGFASTLCQDN 233
NVF L QQG T+ N++ GF S L QD+
Sbjct: 1306 NVFLLMQQG-TVKNLLGGFLSILTQDD 1331
>U67615-1|AAB41309.1| 3801|Homo sapiens beige protein homolog protein.
Length = 3801
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 153 NVFRLYQQGQTIVNVISGFASTLCQDN 233
NVF L QQG T+ N++ GF S L QD+
Sbjct: 1306 NVFLLMQQG-TVKNLLGGFLSILTQDD 1331
>AL390765-1|CAI14952.1| 3801|Homo sapiens lysosomal trafficking
regulator protein.
Length = 3801
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 153 NVFRLYQQGQTIVNVISGFASTLCQDN 233
NVF L QQG T+ N++ GF S L QD+
Sbjct: 1306 NVFLLMQQG-TVKNLLGGFLSILTQDD 1331
>AL121997-1|CAI18987.1| 3801|Homo sapiens lysosomal trafficking
regulator protein.
Length = 3801
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 153 NVFRLYQQGQTIVNVISGFASTLCQDN 233
NVF L QQG T+ N++ GF S L QD+
Sbjct: 1306 NVFLLMQQG-TVKNLLGGFLSILTQDD 1331
>M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collagen
protein.
Length = 1838
Score = 29.9 bits (64), Expect = 9.1
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +3
Query: 456 PPGPRASRGVRGPARAAFP 512
PPGP S G RGPA AA P
Sbjct: 1082 PPGPAGSPGERGPAGAAGP 1100
>D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain
precursor protein.
Length = 1838
Score = 29.9 bits (64), Expect = 9.1
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +3
Query: 456 PPGPRASRGVRGPARAAFP 512
PPGP S G RGPA AA P
Sbjct: 1082 PPGPAGSPGERGPAGAAGP 1100
>AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 29.9 bits (64), Expect = 9.1
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +3
Query: 456 PPGPRASRGVRGPARAAFP 512
PPGP S G RGPA AA P
Sbjct: 1082 PPGPAGSPGERGPAGAAGP 1100
>AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 29.9 bits (64), Expect = 9.1
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +3
Query: 456 PPGPRASRGVRGPARAAFP 512
PPGP S G RGPA AA P
Sbjct: 1082 PPGPAGSPGERGPAGAAGP 1100
>AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 29.9 bits (64), Expect = 9.1
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +3
Query: 456 PPGPRASRGVRGPARAAFP 512
PPGP S G RGPA AA P
Sbjct: 1082 PPGPAGSPGERGPAGAAGP 1100
>AK172772-1|BAD18755.1| 127|Homo sapiens protein ( Homo sapiens
cDNA FLJ23933 fis, clone COL07392. ).
Length = 127
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 386 NRCKKTVTVLHKLEAHHRSTAMKYGCSLTLPCPPFCGSISRDAASCL 246
N+ K +T L+ L++ S C +PC G + RD+A+ L
Sbjct: 49 NKLMKKITQLYFLKSAEHSCCSLMECFTAVPCIRAAGKLHRDSATAL 95
>AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V collagen
variant protein.
Length = 1792
Score = 29.9 bits (64), Expect = 9.1
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +3
Query: 456 PPGPRASRGVRGPARAAFP 512
PPGP S G RGPA AA P
Sbjct: 1036 PPGPAGSPGERGPAGAAGP 1054
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,925,978
Number of Sequences: 237096
Number of extensions: 2030822
Number of successful extensions: 8247
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8207
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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