Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060055.seq
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical pr...    36   0.028
Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical pr...    36   0.028
AC084158-10|AAK68568.1|   87|Caenorhabditis elegans Hypothetical...    31   1.0  
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    29   4.2  
AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine r...    28   5.5  
Z70782-10|CAN86639.1|  456|Caenorhabditis elegans Hypothetical p...    28   7.3  
Z70782-9|CAA94840.1|  453|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U53340-5|AAR25650.1|  425|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U53340-4|AAA96209.2|  445|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U41009-10|AAA82284.2|  313|Caenorhabditis elegans Serpentine rec...    27   9.7  
M23064-1|AAA27892.1|  609|Caenorhabditis elegans Na+/H+ antiport...    27   9.7  

>Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +3

Query: 510 PTLDVIFVHGLYGSLSNTWRQGD 578
           P +D++ +HGL GS++ TWRQ D
Sbjct: 265 PEIDIVLIHGLRGSVAYTWRQKD 287


>Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +3

Query: 510 PTLDVIFVHGLYGSLSNTWRQGD 578
           P +D++ +HGL GS++ TWRQ D
Sbjct: 265 PEIDIVLIHGLRGSVAYTWRQKD 287


>AC084158-10|AAK68568.1|   87|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.23 protein.
          Length = 87

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 553 KDPYSPWTKMTSRVGKAARAGPRTPREARGPGGRSP 446
           K P SP   M+ RVG + +   RTP+ AR P  + P
Sbjct: 35  KSPVSPRIGMSPRVGLSPKPIARTPQTARTPTKKGP 70


>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform a protein.
          Length = 1051

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +3

Query: 294 RQRQTAPVFHCGATVVRFELMEDGHRFLASIGRRQTA--ANQSETSQNEAQGAGDRPPGP 467
           ++ +    F  G+  ++ E  ++ +  + +  R  T      SE   +EA       P P
Sbjct: 322 KENRNGSKFANGSVTIKLETSDNLNDKITNSDRTPTPYPPADSERPISEASSCHSESP-P 380

Query: 468 RASRGVRGPARAAFPTLD 521
           R S+  R P+R   PT+D
Sbjct: 381 RDSKPPRSPSRVTIPTID 398


>AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine
           receptor, class j protein20 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 295 GNVRLHPYFIAVLRWCASS--LWRTVTVFLHRLVAVRL 402
           GN R   YF AV   CAS+  L   VTVF +R   V L
Sbjct: 38  GNYRYLLYFFAVFNLCASAADLLIPVTVFCYRYAFVTL 75


>Z70782-10|CAN86639.1|  456|Caenorhabditis elegans Hypothetical
           protein R04B5.4b protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 132 QTNIELDNVFRLYQQGQTIVNVISG 206
           Q +IE+ N+F +Y   +  VN+I+G
Sbjct: 429 QEDIEMANIFNIYALPENFVNIING 453


>Z70782-9|CAA94840.1|  453|Caenorhabditis elegans Hypothetical
           protein R04B5.4a protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 132 QTNIELDNVFRLYQQGQTIVNVISG 206
           Q +IE+ N+F +Y   +  VN+I+G
Sbjct: 426 QEDIEMANIFNIYALPENFVNIING 450


>U53340-5|AAR25650.1|  425|Caenorhabditis elegans Hypothetical
           protein F02E8.2b protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 665 FNAVCIIESFRSMVYQSL*FRFAFVCWFPIALTPSVA*GSV 543
           F A+C   S R++  +    RF  + WF +AL PS+  GS+
Sbjct: 175 FTAICYPFSHRTIFDEKRVKRFILLIWF-VALLPSIFIGSM 214


>U53340-4|AAA96209.2|  445|Caenorhabditis elegans Hypothetical
           protein F02E8.2a protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 665 FNAVCIIESFRSMVYQSL*FRFAFVCWFPIALTPSVA*GSV 543
           F A+C   S R++  +    RF  + WF +AL PS+  GS+
Sbjct: 175 FTAICYPFSHRTIFDEKRVKRFILLIWF-VALLPSIFIGSM 214


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 84  RNLYYQFKSYFVS*IDQTNIELDNVFRLYQQGQTIVNVISGFASTLCQDNQRLA*T 251
           +N  Y F +Y    ++Q + + D  F ++  G    +VISG +    QD    A T
Sbjct: 785 QNKDYDFMNYITKLLNQFSTQDDTHFSMFAYGAFKTSVISGLSVHSSQDISNFAVT 840


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 84  RNLYYQFKSYFVS*IDQTNIELDNVFRLYQQGQTIVNVISGFASTLCQDNQRLA*T 251
           +N  Y F +Y    ++Q + + D  F ++  G    +VISG +    QD    A T
Sbjct: 798 QNKDYDFMNYITKLLNQFSTQDDTHFSMFAYGAFKTSVISGLSVHSSQDISNFAVT 853


>U41009-10|AAA82284.2|  313|Caenorhabditis elegans Serpentine
           receptor, class v protein17 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -2

Query: 622 IRVFNSGSL--LYVGFQSP*RQVLLKDP--YSPWTKMT 521
           + +FNS  L  L +GF SP R +L+ DP   S  TK+T
Sbjct: 139 VAIFNSIFLSSLEIGFDSPERMILVMDPDIISKTTKIT 176


>M23064-1|AAA27892.1|  609|Caenorhabditis elegans Na+/H+ antiporter
           protein.
          Length = 609

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 456 PPGPRASRGVRGPARAAFPTLDVIFVHGLYGSLSNTWRQG 575
           PP    S G   P RA F   D + V  ++G++ NT+  G
Sbjct: 49  PPIIFGSSGYFMPNRALFENFDSVLVFSVFGTIWNTFAIG 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,163,688
Number of Sequences: 27780
Number of extensions: 309200
Number of successful extensions: 1176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)