Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060055.seq
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34310.2 68417.m04876 expressed protein                             33   0.18 
At4g34310.1 68417.m04877 expressed protein                             33   0.18 
At4g29520.1 68417.m04211 expressed protein                             30   1.7  
At1g26650.1 68414.m03245 expressed protein                             30   1.7  
At1g78620.2 68414.m09163 integral membrane family protein contai...    29   2.9  
At1g78620.1 68414.m09162 integral membrane family protein contai...    29   2.9  
At1g32710.1 68414.m04034 cytochrome c oxidase subunit VIb family...    29   3.9  
At4g04070.1 68417.m00576 hypothetical protein low similarity to ...    28   6.8  
At3g16420.2 68416.m02084 jacalin lectin family protein similar t...    27   9.0  
At3g16420.1 68416.m02083 jacalin lectin family protein similar t...    27   9.0  

>At4g34310.2 68417.m04876 expressed protein 
          Length = 1035

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 510  PTLDVIFVHGLYGSLSNTWRQGDWKPTYKS 599
            P  DVIF+HGL G    TWR  + K + KS
Sbjct: 951  PEFDVIFLHGLRGGPFKTWRIAEDKSSTKS 980


>At4g34310.1 68417.m04877 expressed protein 
          Length = 1228

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 510  PTLDVIFVHGLYGSLSNTWRQGDWKPTYKS 599
            P  DVIF+HGL G    TWR  + K + KS
Sbjct: 951  PEFDVIFLHGLRGGPFKTWRIAEDKSSTKS 980


>At4g29520.1 68417.m04211 expressed protein
          Length = 306

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 591 YKSEPELKTLINHTSKTLDNADSVK 665
           YKS+P+L +L+NH  K L +A S K
Sbjct: 144 YKSKPDLVSLVNHLCKDLTDACSKK 168


>At1g26650.1 68414.m03245 expressed protein
          Length = 335

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = -1

Query: 212 SKTRYHINNSLTLLV*SEHII*FNVGLINLTHKITFKLIIQISIIFLHNFFI 57
           S  ++H +N+L +L  +  I+ +N+G + LT   T  LI  +S + L NF +
Sbjct: 18  SHKQFHSSNALEILRETVRILRYNLGALMLT---TAVLICPVSALLLPNFLV 66


>At1g78620.2 68414.m09163 integral membrane family protein contains
           Pfam domain PF01940: Integral membrane protein
          Length = 342

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 399 TAANQSETSQNEAQGAGDRPPGPRASRGVRGPARA 503
           TAA + + +Q EAQG  ++  G R  R V G + A
Sbjct: 152 TAATKVKMTQKEAQGVAEKRKGRRGPRSVIGSSAA 186


>At1g78620.1 68414.m09162 integral membrane family protein contains
           Pfam domain PF01940: Integral membrane protein
          Length = 333

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 399 TAANQSETSQNEAQGAGDRPPGPRASRGVRGPARA 503
           TAA + + +Q EAQG  ++  G R  R V G + A
Sbjct: 143 TAATKVKMTQKEAQGVAEKRKGRRGPRSVIGSSAA 177


>At1g32710.1 68414.m04034 cytochrome c oxidase subunit VIb family
           contains similarity to subunit 6b of cytochrome c
           oxidase [Arabidopsis thaliana] GI:6518353; contains Pfam
           profile PF02297: Cytochrome oxidase c subunit VIb
          Length = 134

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 538 PWTKMTSR-VGKAARAGPRTPREARGPGGRSPAP 440
           P  KM SR + K AR G + PR A  PG  SP P
Sbjct: 8   PHDKMRSRDISKVAR-GQQAPRPAHTPGTVSPPP 40


>At4g04070.1 68417.m00576 hypothetical protein low similarity to
           protective antigen [Streptococcus pyogenes] GI:8996050,
           fibrinogen-binding protein [Streptococcus equi]
           GI:3093478
          Length = 728

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 442 VPGTDHLDP---VPRVECVVLHEPPFLPSTSSSS 534
           VP T  LDP   VPR+E V   + P +P  SSS+
Sbjct: 225 VPPTAQLDPIEEVPRIEPVPQADLPIIPPDSSST 258


>At3g16420.2 68416.m02084 jacalin lectin family protein similar to
           myrosinase binding protein [Brassica napus] GI:1711296;
           contains Pfam profile: PF01419 jacalin-like lectin
           domain
          Length = 298

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 300 RQTAPVFHCGATVVRFELMEDGHRFLASIGR 392
           +QT+P F   A  V FEL E+GH+ +   GR
Sbjct: 252 KQTSPPFGLEAGTV-FELKEEGHKIVGFHGR 281


>At3g16420.1 68416.m02083 jacalin lectin family protein similar to
           myrosinase binding protein [Brassica napus] GI:1711296;
           contains Pfam profile: PF01419 jacalin-like lectin
           domain
          Length = 298

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 300 RQTAPVFHCGATVVRFELMEDGHRFLASIGR 392
           +QT+P F   A  V FEL E+GH+ +   GR
Sbjct: 252 KQTSPPFGLEAGTV-FELKEEGHKIVGFHGR 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,386,414
Number of Sequences: 28952
Number of extensions: 287107
Number of successful extensions: 840
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)