Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060054.seq
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.9  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    22   4.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -2

Query: 712  LIWSTNNCLNKNGTLNSITDHRGPLIPHASGCNLT 608
            L W    C + +G  + IT H  P+  H    + T
Sbjct: 2007 LDWIAVMCYDYHGQWDKITGHVAPMYAHPEDADAT 2041


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 79  IEITLQSNYLKNTYNLI 129
           I++TLQ N+ K +YN++
Sbjct: 309 IDLTLQENHGKISYNVL 325


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 655 QLLSLEYHFYLNSYL 699
           QLL LE  F+ N YL
Sbjct: 15  QLLELEKEFHFNKYL 29


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 655 QLLSLEYHFYLNSYL 699
           QLL LE  F+ N YL
Sbjct: 146 QLLELEKEFHFNKYL 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,602
Number of Sequences: 336
Number of extensions: 4290
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)