Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060054.seq
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0622 - 8175226-8175312,8175674-8175763,8176370-8176457,817...    30   2.2  
03_02_0162 + 6053144-6053365,6053474-6053548,6054477-6054623,605...    30   2.2  
01_06_0201 - 27477392-27479728                                         29   5.0  
05_03_0263 + 11234850-11235044,11235413-11237341                       28   8.7  
05_01_0597 + 5363049-5363429,5363559-5363715,5364390-5364757           28   8.7  

>04_01_0622 -
           8175226-8175312,8175674-8175763,8176370-8176457,
           8177021-8177095,8177754-8177821,8177898-8177955,
           8178862-8178942,8179968-8180038,8180144-8180225,
           8182327-8182449,8183023-8183129,8183201-8183263,
           8183877-8183936,8184100-8184151,8185566-8185598,
           8185820-8185871,8185965-8186028,8186693-8186749,
           8186962-8187006,8187083-8187190,8188147-8188212,
           8188382-8188492,8190841-8191035,8191419-8191499,
           8191591-8191630,8191764-8191816
          Length = 669

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 259 QNKLQNILSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVD 384
           Q  L NIL     KK ++IDP L   L  I   + L+++G +
Sbjct: 22  QKDLLNILKSIRGKKCVVIDPKLAGTLSLILQTSLLKEYGAE 63


>03_02_0162 +
           6053144-6053365,6053474-6053548,6054477-6054623,
           6054749-6055300,6055387-6055622,6055914-6056130
          Length = 482

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 65  CSLFSRAEFLQPGGSTSSRAA 3
           C +  +AEFL PGGS   R A
Sbjct: 73  CEILGKAEFLNPGGSVKDRVA 93


>01_06_0201 - 27477392-27479728
          Length = 778

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 167 VIATNFGV*LIERSTMDQPLNLKLSSLSLIHKT 265
           +IA++ G+ +  R T+DQ  NLKL SL+ + K+
Sbjct: 231 IIASDSGLGINRRLTIDQDGNLKLYSLNKVEKS 263


>05_03_0263 + 11234850-11235044,11235413-11237341
          Length = 707

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = -1

Query: 470 LYFMMHAGIKYTLFGFAVGPSWGSILYILSTPCCLSHVTPHILSKALIK 324
           LYF+  +G+K  +     G SWG ++ +++T  C+  +   +L+  +++
Sbjct: 238 LYFVS-SGLKTNVLTIKGGDSWGLLVLVVAT-ACIGKIGGTVLASLIVR 284


>05_01_0597 + 5363049-5363429,5363559-5363715,5364390-5364757
          Length = 301

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 715 GLIWSTNNCLNKNGTLNSITDHRGPLIPHAS 623
           GL+W T N L + G L  + DHR   +P  S
Sbjct: 14  GLVWGTTNALMRRGAL--VWDHRLRSLPATS 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,531,311
Number of Sequences: 37544
Number of extensions: 396014
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)