Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060054.seq
         (728 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY752902-1|AAV30076.1|  106|Anopheles gambiae peroxidase 8 protein.    26   1.0  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    24   5.5  
AJ001042-1|CAA04496.1|  395|Anopheles gambiae putative gram nega...    24   5.5  
AF081533-1|AAD29854.1|  395|Anopheles gambiae putative gram nega...    24   5.5  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   7.3  

>AY752902-1|AAV30076.1|  106|Anopheles gambiae peroxidase 8 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 389 YTKWIPNLVQRRTQIEYTLFQRAS*NTNVSWTKYHRSLVRS 511
           Y +W+PN + R   +E  L   AS  TN      + S++ S
Sbjct: 58  YNEWLPNFLGRSYMLEQQLIYPASTATNDYSATINPSVINS 98


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 485  WSRTHLYFMMHAGIKYTLFGFAVGPSWGSILYI 387
            WSR   +F   +    TLF  +    W  +LY+
Sbjct: 1047 WSRNRFHFDDVSKAMLTLFTVSTFEGWPGLLYV 1079


>AJ001042-1|CAA04496.1|  395|Anopheles gambiae putative gram
           negative bacteria bindingprotein protein.
          Length = 395

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -2

Query: 658 TDHRGPLIPHASGCNLTTPYKPLLSNIE-SNEFKTFGIIMMWKPFTSAIDGSD 503
           T H GP  P  +G    T  K  L   E S  F TFG +      T +I+G D
Sbjct: 238 TLHFGPN-PSYNGYPTATLTKNALPEQEFSKSFSTFGFVWTPDNITVSINGED 289


>AF081533-1|AAD29854.1|  395|Anopheles gambiae putative gram
           negative bacteria bindingprotein protein.
          Length = 395

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -2

Query: 658 TDHRGPLIPHASGCNLTTPYKPLLSNIE-SNEFKTFGIIMMWKPFTSAIDGSD 503
           T H GP  P  +G    T  K  L   E S  F TFG +      T +I+G D
Sbjct: 238 TLHFGPN-PSYNGYPTATLTKNALPEQEFSKSFSTFGFVWTPDNITVSINGED 289


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 18/75 (24%), Positives = 31/75 (41%)
 Frame = +3

Query: 237 CHHYHLFTKQITKYIESVWREKGFNNRSILD*GFGKNMRCDMAQTTWS*QNIQNGSPTWS 416
           C++ HL+   +  YI      +    RS+ D      +R   +   +   +    S +WS
Sbjct: 178 CNNAHLYVMVV--YIPPQLSSEISTLRSLHDCISSFTLRLKPSDLLFVIGDFNQPSISWS 235

Query: 417 NGEPK*SILYSSVHH 461
             +P  S  YSS+ H
Sbjct: 236 TADPSSSPAYSSITH 250


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 790,621
Number of Sequences: 2352
Number of extensions: 15714
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)