Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060054.seq
         (728 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC016445-1|AAH16445.1|  617|Homo sapiens vacuolar protein sortin...    47   8e-05
AK027754-1|BAB55345.1|  617|Homo sapiens protein ( Homo sapiens ...    47   8e-05
AF308803-1|AAG34680.1|  617|Homo sapiens vacuolar protein sortin...    47   8e-05
AF201694-1|AAF91174.1|  617|Homo sapiens vacuolar protein sortin...    47   8e-05

>BC016445-1|AAH16445.1|  617|Homo sapiens vacuolar protein sorting
           33 homolog B (yeast) protein.
          Length = 617

 Score = 46.8 bits (106), Expect = 8e-05
 Identities = 22/63 (34%), Positives = 39/63 (61%)
 Frame = +1

Query: 259 QNKLQNILSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVDKIYKMDPQLGPTANPNRV 438
           +++L  +L Q   KKDL I+  L+  L+RI  V+ L+QH VDK+YK++ +   ++N    
Sbjct: 23  RDQLIYLLEQLPGKKDLFIEADLMSPLDRIANVSILKQHEVDKLYKVENKPALSSNEQLC 82

Query: 439 YFI 447
           + +
Sbjct: 83  FLV 85


>AK027754-1|BAB55345.1|  617|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14848 fis, clone PLACE1000492, highly similar to
           Rat vacuolar protein sorting homolog r-vps33b mRNA. ).
          Length = 617

 Score = 46.8 bits (106), Expect = 8e-05
 Identities = 22/63 (34%), Positives = 39/63 (61%)
 Frame = +1

Query: 259 QNKLQNILSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVDKIYKMDPQLGPTANPNRV 438
           +++L  +L Q   KKDL I+  L+  L+RI  V+ L+QH VDK+YK++ +   ++N    
Sbjct: 23  RDQLIYLLEQLPGKKDLFIEADLMSPLDRIANVSILKQHEVDKLYKVENKPALSSNEQLC 82

Query: 439 YFI 447
           + +
Sbjct: 83  FLV 85


>AF308803-1|AAG34680.1|  617|Homo sapiens vacuolar protein sorting
           protein 33B protein.
          Length = 617

 Score = 46.8 bits (106), Expect = 8e-05
 Identities = 22/63 (34%), Positives = 39/63 (61%)
 Frame = +1

Query: 259 QNKLQNILSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVDKIYKMDPQLGPTANPNRV 438
           +++L  +L Q   KKDL I+  L+  L+RI  V+ L+QH VDK+YK++ +   ++N    
Sbjct: 23  RDQLIYLLEQLPGKKDLFIEADLMSPLDRIANVSILKQHEVDKLYKVENKPALSSNEQLC 82

Query: 439 YFI 447
           + +
Sbjct: 83  FLV 85


>AF201694-1|AAF91174.1|  617|Homo sapiens vacuolar protein sorting
           33B protein.
          Length = 617

 Score = 46.8 bits (106), Expect = 8e-05
 Identities = 22/63 (34%), Positives = 39/63 (61%)
 Frame = +1

Query: 259 QNKLQNILSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVDKIYKMDPQLGPTANPNRV 438
           +++L  +L Q   KKDL I+  L+  L+RI  V+ L+QH VDK+YK++ +   ++N    
Sbjct: 23  RDQLIYLLEQLPGKKDLFIEADLMSPLDRIANVSILKQHEVDKLYKVENKPALSSNEQLC 82

Query: 439 YFI 447
           + +
Sbjct: 83  FLV 85


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,507,920
Number of Sequences: 237096
Number of extensions: 2234362
Number of successful extensions: 3287
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3287
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)