Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060054.seq
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110478-1|CAB54340.2| 537|Caenorhabditis elegans Hypothetical ... 33 0.21
AC006791-5|AAF60739.1| 330|Caenorhabditis elegans Hypothetical ... 28 5.9
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 28 7.9
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 28 7.9
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 28 7.9
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 28 7.9
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 28 7.9
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 28 7.9
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 28 7.9
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 28 7.9
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 28 7.9
>AL110478-1|CAB54340.2| 537|Caenorhabditis elegans Hypothetical
protein Y26D4A.2 protein.
Length = 537
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +3
Query: 399 GSP-TWSNGEPK*SILYSSVHHKIQM---CPGPNIIAH*SDPSIADVNGFHIIIIPKVLN 566
G+P TW+ GEPK Y+ + + + PG ++A + S+ D+NGF + P+
Sbjct: 451 GAPMTWAPGEPKSQAGYNCAYLEYKYNSPWPGYAMVAAPCNESLPDINGFMCGVDPEGKQ 510
Query: 567 SFDSILESKGLYGV 608
+ LYGV
Sbjct: 511 GIPPMKSIADLYGV 524
>AC006791-5|AAF60739.1| 330|Caenorhabditis elegans Hypothetical
protein Y4C6A.3 protein.
Length = 330
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 421 PLDQVGDPFCIFCQLHVV*AMSHRIF 344
P+ +G P CI+ LH+V A+ + +F
Sbjct: 114 PITHIGVPVCIYIALHIVFALYYFLF 139
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 459 DARWNKVYSIWVRRWTKLGIHFVYFVNSMLS 367
D +W + + WT+L HF + VN++++
Sbjct: 2398 DRKWLSWCAFRLPLWTRLSFHFAFIVNALVA 2428
>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2836
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 459 DARWNKVYSIWVRRWTKLGIHFVYFVNSMLS 367
D +W + + WT+L HF + VN++++
Sbjct: 2377 DRKWLSWCAFRLPLWTRLSFHFAFIVNALVA 2407
>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2892
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 459 DARWNKVYSIWVRRWTKLGIHFVYFVNSMLS 367
D +W + + WT+L HF + VN++++
Sbjct: 2433 DRKWLSWCAFRLPLWTRLSFHFAFIVNALVA 2463
>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 459 DARWNKVYSIWVRRWTKLGIHFVYFVNSMLS 367
D +W + + WT+L HF + VN++++
Sbjct: 2387 DRKWLSWCAFRLPLWTRLSFHFAFIVNALVA 2417
>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 459 DARWNKVYSIWVRRWTKLGIHFVYFVNSMLS 367
D +W + + WT+L HF + VN++++
Sbjct: 2387 DRKWLSWCAFRLPLWTRLSFHFAFIVNALVA 2417
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 459 DARWNKVYSIWVRRWTKLGIHFVYFVNSMLS 367
D +W + + WT+L HF + VN++++
Sbjct: 2398 DRKWLSWCAFRLPLWTRLSFHFAFIVNALVA 2428
>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform f protein.
Length = 2846
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 459 DARWNKVYSIWVRRWTKLGIHFVYFVNSMLS 367
D +W + + WT+L HF + VN++++
Sbjct: 2387 DRKWLSWCAFRLPLWTRLSFHFAFIVNALVA 2417
>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform d protein.
Length = 2836
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 459 DARWNKVYSIWVRRWTKLGIHFVYFVNSMLS 367
D +W + + WT+L HF + VN++++
Sbjct: 2377 DRKWLSWCAFRLPLWTRLSFHFAFIVNALVA 2407
>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform a protein.
Length = 2892
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 459 DARWNKVYSIWVRRWTKLGIHFVYFVNSMLS 367
D +W + + WT+L HF + VN++++
Sbjct: 2433 DRKWLSWCAFRLPLWTRLSFHFAFIVNALVA 2463
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,315,240
Number of Sequences: 27780
Number of extensions: 374564
Number of successful extensions: 830
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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