Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060054.seq
(728 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 29 0.034
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 23 2.2
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 23 2.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 21 9.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.0
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 21 9.0
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 29.5 bits (63), Expect = 0.034
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 65 CSLFSRAEFLQPGGSTSSRAA 3
C ++++ EFL PGGS R A
Sbjct: 62 CEIYAKCEFLNPGGSVKDRIA 82
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 613 LTTPYKPLLSNIESNEFK 560
L+T PLL NI SN+F+
Sbjct: 339 LSTTVNPLLYNIMSNKFR 356
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 23.4 bits (48), Expect = 2.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -2
Query: 418 LDQVGDPFCIFCQLH 374
++ +GD +C+ C LH
Sbjct: 535 VETIGDAYCVACGLH 549
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
V PSW +L++ PC L P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
V PSW +L++ PC L P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
V PSW +L++ PC L P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
V PSW +L++ PC L P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
V PSW +L++ PC L P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
V PSW +L++ PC L P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 616 NLTTPYKPLLSNIESNEFKTFG 551
N+T + LL N E+N+ T G
Sbjct: 36 NITMVLENLLMNYENNQLPTHG 57
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
V PSW +L++ PC L P
Sbjct: 358 VMPSWIKMLFLQWLPCLLRMSRP 380
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
V PSW +L++ PC L P
Sbjct: 358 VMPSWIKMLFLQWLPCLLRMSRP 380
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 21.4 bits (43), Expect = 9.0
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +3
Query: 483 PNIIAH*SDPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKL 617
PN S+ SI + + + +V++ FD+IL+ ++K+
Sbjct: 795 PNFADFYSEESINNQGLECLRFLNEVISDFDAILDQNKFKDIIKI 839
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,061
Number of Sequences: 438
Number of extensions: 4667
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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