Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060053.seq
(634 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ223627-1|CAA11500.1| 371|Tribolium castaneum orthodenticle-1 ... 30 0.018
AY490815-1|AAR82970.1| 136|Tribolium castaneum glass protein pr... 25 0.69
AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein pr... 25 0.69
AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like prote... 23 2.8
AY884065-1|AAX84206.1| 697|Tribolium castaneum laccase 1 protein. 22 3.7
U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein. 21 6.5
U81038-1|AAB39355.1| 412|Tribolium castaneum transcription fact... 21 6.5
AJ307577-1|CAC84070.1| 301|Tribolium castaneum dachshund protein. 21 6.5
AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein. 21 6.5
AF243042-1|AAF68438.1| 126|Tribolium castaneum mutant transcrip... 21 6.5
>AJ223627-1|CAA11500.1| 371|Tribolium castaneum orthodenticle-1
protein protein.
Length = 371
Score = 29.9 bits (64), Expect = 0.018
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 417 PSRQPPTAESGLGGSVAATGVPALVQARGHILKRFPSFP 533
P P+ SGLGG ++ +PAL GH L+ P FP
Sbjct: 76 PYAPHPSLSSGLGGGLSGMPMPALGFGLGHPLESVP-FP 113
>AY490815-1|AAR82970.1| 136|Tribolium castaneum glass protein
protein.
Length = 136
Score = 24.6 bits (51), Expect = 0.69
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 437 SGERPWRQRCCYRRPSARSG*RTHI 511
SGE+P+R C RR S S TH+
Sbjct: 45 SGEKPFRCPVCDRRFSQSSSVTTHM 69
Score = 23.0 bits (47), Expect = 2.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 416 TVASTSDSGERPWRQRCCYRRPSARSG*RTHI 511
T + SGERP+R R C + S S H+
Sbjct: 66 TTHMRTHSGERPYRCRLCKKAFSDSSTLTKHL 97
>AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein
protein.
Length = 392
Score = 24.6 bits (51), Expect = 0.69
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 437 SGERPWRQRCCYRRPSARSG*RTHI 511
SGE+P+R C RR S S TH+
Sbjct: 301 SGEKPFRCPVCDRRFSQSSSVTTHM 325
Score = 23.0 bits (47), Expect = 2.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 416 TVASTSDSGERPWRQRCCYRRPSARSG*RTHI 511
T + SGERP+R R C + S S H+
Sbjct: 322 TTHMRTHSGERPYRCRLCKKAFSDSSTLTKHL 353
>AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like protein
protein.
Length = 314
Score = 22.6 bits (46), Expect = 2.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 437 SGERPWRQRCCYRRPSARSG*RTHI 511
+GERP++ + C R + + +TH+
Sbjct: 158 TGERPFKCKICGRAFTTKGNLKTHM 182
>AY884065-1|AAX84206.1| 697|Tribolium castaneum laccase 1 protein.
Length = 697
Score = 22.2 bits (45), Expect = 3.7
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Frame = -1
Query: 352 HPDRTYEYH---HHGHAEFGRQHVQYPMIQHWFGDHLL-------AHAVGLPRVLGHRNV 203
HP T+ YH H+ F H + FG ++ HA L +
Sbjct: 158 HPGMTFRYHFNVHNSGTHFWHSHSGFQRSDGTFGPFIVRVPEEDNPHAKLYDYDLSSHVI 217
Query: 202 NIIDQVRTDG 173
I+D + DG
Sbjct: 218 TILDWTKEDG 227
>U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein.
Length = 283
Score = 21.4 bits (43), Expect = 6.5
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -1
Query: 307 FGRQHVQYPMIQHWFGDH 254
FG H+Q +Q+ + +H
Sbjct: 50 FGNHHIQQQQLQYGYHNH 67
>U81038-1|AAB39355.1| 412|Tribolium castaneum transcription factor
Deformed protein.
Length = 412
Score = 21.4 bits (43), Expect = 6.5
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -1
Query: 307 FGRQHVQYPMIQHWFGDH 254
FG H+Q +Q+ + +H
Sbjct: 50 FGNHHIQQQQLQYGYHNH 67
>AJ307577-1|CAC84070.1| 301|Tribolium castaneum dachshund protein.
Length = 301
Score = 21.4 bits (43), Expect = 6.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -3
Query: 140 HPAPSHSSLNTPTL 99
HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134
>AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein.
Length = 412
Score = 21.4 bits (43), Expect = 6.5
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -1
Query: 307 FGRQHVQYPMIQHWFGDH 254
FG H+Q +Q+ + +H
Sbjct: 50 FGNHHIQQQQLQYGYHNH 67
>AF243042-1|AAF68438.1| 126|Tribolium castaneum mutant
transcription factor TcDfd1 protein.
Length = 126
Score = 21.4 bits (43), Expect = 6.5
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -1
Query: 307 FGRQHVQYPMIQHWFGDH 254
FG H+Q +Q+ + +H
Sbjct: 50 FGNHHIQQQQLQYGYHNH 67
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,419
Number of Sequences: 336
Number of extensions: 2971
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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