Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060053.seq
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 119 2e-27
07_01_0578 + 4295386-4296489,4297394-4297507 119 2e-27
10_02_0199 + 6668902-6669293,6669825-6669882 38 0.009
11_01_0748 + 6299776-6300042 32 0.33
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 31 0.58
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 31 1.0
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.3
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 2.3
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 29 2.3
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 29 3.1
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078 29 3.1
10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955 29 4.1
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 4.1
02_04_0457 + 23093020-23093343,23093798-23093806 29 4.1
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 7.1
04_01_0208 + 2596110-2596928 28 7.1
10_08_0213 - 15912048-15912716 27 9.4
08_02_1278 - 25838146-25839411 27 9.4
05_03_0446 + 14111667-14111906,14112011-14112418 27 9.4
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 27 9.4
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 27 9.4
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 27 9.4
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 119 bits (287), Expect = 2e-27
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 417
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 62 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWH 115
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 83 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 250
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSR 59
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +2
Query: 509 IEKIPELPLVVADKVQEINKTKQAVIFLK 595
IE +PE PLVV+D ++ I KT Q++ LK
Sbjct: 147 IEGVPEFPLVVSDSIESIEKTAQSIKVLK 175
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 450 LGGSVAATGVPALVQARGHILKRFPSFP 533
+ ++AAT VP+LV ARGH ++ P FP
Sbjct: 127 VASALAATAVPSLVLARGHRIEGVPEFP 154
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 119 bits (286), Expect = 2e-27
Identities = 49/54 (90%), Positives = 52/54 (96%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 417
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 63 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWH 116
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Frame = +2
Query: 92 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 250
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSR 60
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2
Query: 509 IEKIPELPLVVADKVQEINKTKQAVIFLK 595
IE +PELPLV++D + I KT QA+ LK
Sbjct: 148 IETVPELPLVISDSAESIEKTSQAIKILK 176
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 450 LGGSVAATGVPALVQARGHILKRFPSFP 533
+ ++AAT VP+LV ARGH ++ P P
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELP 155
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/47 (46%), Positives = 24/47 (51%)
Frame = +1
Query: 241 REQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 381
RE GGG A+SW TGRA A + R R GG R A N G R
Sbjct: 30 REGGGG----AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>11_01_0748 + 6299776-6300042
Length = 88
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 223 LEAALL--REQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
LEA L+ R GGG + E+ G GRAVA + R H +G GA GG
Sbjct: 16 LEAVLVDRRMAGGGDDGAVETGGGGRAVAALARCWRRRWHGAGGGAGAVEAGGG 69
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 31.5 bits (68), Expect = 0.58
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +1
Query: 217 QELEAALLREQGGGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGR 381
+++ A ++GGG S S G++V + + R+R H G G+ G++ + GG+
Sbjct: 64 EKVSGAKSTDEGGGSDKSKGS-EVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGK 122
Query: 382 MFAPTKP-WR 408
M P P WR
Sbjct: 123 MLRPGFPKWR 132
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 376 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDH 254
HH + H + YE+ + H + RQ QY QH +H
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNH 190
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +1
Query: 55 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 210
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 55 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 210
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 340 TYEYHH-HGHAEFGRQHVQYPMIQHWFGDHLLAHAVGLPRVLGH 212
T+++HH HGH FGR H +P H G ++ + G P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHHPAGG-MVNYGGGAPYYAAH 184
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 29.1 bits (62), Expect = 3.1
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +1
Query: 133 AGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGGGHQTSAESWGTGRAVARIP 312
+G ++A + + P GP ++ +++L A RE + +A + T +A +
Sbjct: 448 SGYTRAATLNLPSVIPIGPRN--TQENIKQLLAGGQRELVATGEAAATAAATAKATPPLA 505
Query: 313 R-VRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 411
R GG HR G+G G GG WRR
Sbjct: 506 RRTADGGAHR-GRGGGGAEADGGARRGRGGGWRR 538
>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
Length = 455
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = +1
Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ--GAFGNMCRGGRMFAPTKPWRRW 414
GGG S S G + GGG R G GA G + GG + WRRW
Sbjct: 74 GGGDDGSGHSGGRSSPPGWLRPAGGGGRRRGGHGGGAGGGVGAGG----GAEWWRRW 126
>10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955
Length = 184
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
GGG WG+G + + GGG + SG G G
Sbjct: 38 GGGGSNGGSGWGSGSG-SGYGQASGGGAYASGGGGAG 73
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 250 GGGHQTSAES-WGTGRAVARIPRVRGGGTHRSGQGAFGN 363
GGG+ E+ +G GR RGGG R G+G G+
Sbjct: 168 GGGYHGDGEAGYGRGRGGRDYDGGRGGGGRRGGRGGGGS 206
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 397 SWGRTYVHHDTCYRRHPDRTYEYHH 323
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>04_01_0208 + 2596110-2596928
Length = 272
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +1
Query: 241 REQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF-GNMCRGGRMFAPTKP-WRRW 414
R +GGG + E GR GGG + A G R +P WRRW
Sbjct: 118 RGRGGGCEAEGEDGAAGRRSGEEGEAAGGGRRGGKRRAMAGTRLRRSPCETEGRPGWRRW 177
>10_08_0213 - 15912048-15912716
Length = 222
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
QGGG+ S +G+GR + GGG + SG G G +GG
Sbjct: 160 QGGGYG-SGSGYGSGRGYGQGGGAYGGG-YASGGGGGGGGGQGG 201
>08_02_1278 - 25838146-25839411
Length = 421
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 592 QEDDSLFGLVDLLDFVGYNQGKLGNLFN 509
+E LF L+D+LD V +G+L LF+
Sbjct: 91 REPQRLFRLLDMLDAVARERGRLDELFS 118
>05_03_0446 + 14111667-14111906,14112011-14112418
Length = 215
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 384 VRPHEALAALAPSRQPPTAESGLGGSVAATG 476
+RP ++LA L+P+R +A +G G + A +G
Sbjct: 114 LRPTKSLAHLSPARASSSAAAGGGSATAPSG 144
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 390 PHEALAALAPSRQPPTAESGLGGSVAATGVPA 485
P A +AP PP G+GG G PA
Sbjct: 1175 PPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPA 1206
>03_06_0646 +
35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 197 DVHVSMSKNSRQPYCVSKEVVTKPVLNHGVL 289
DVH+ +++NSR Y ++K++V HGVL
Sbjct: 798 DVHIVLTENSRDRY-INKKLVAVGRDKHGVL 827
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 349 PDRTYEYHHHGHAEFGRQHVQYPMIQH 269
P + +HHHGH G H Q QH
Sbjct: 33 PQEHHHHHHHGH--HGHHHEQQQQQQH 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,090,606
Number of Sequences: 37544
Number of extensions: 428479
Number of successful extensions: 1734
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1727
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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