Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060053.seq
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   110   9e-25
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL132949-40|CAN99706.1|  329|Caenorhabditis elegans Hypothetical...    28   4.8  
AL132949-39|CAB61094.1|  295|Caenorhabditis elegans Hypothetical...    28   4.8  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    28   6.4  
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    28   6.4  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    27   8.4  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    27   8.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  110 bits (264), Expect = 9e-25
 Identities = 48/54 (88%), Positives = 49/54 (90%)
 Frame = +1

Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 417
           G Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 58  GKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +2

Query: 89  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 247
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVN 54



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 16/29 (55%), Positives = 25/29 (86%)
 Frame = +2

Query: 509 IEKIPELPLVVADKVQEINKTKQAVIFLK 595
           I+++ E+PLVV+DKV+   KTK+AV+FL+
Sbjct: 143 IDQVAEVPLVVSDKVESFRKTKEAVVFLR 171



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 450 LGGSVAATGVPALVQARGHILKRFPSFPWL*PTKSKXXXXXXXXXXXXXXLKAWSDILXV 629
           +  ++AA+G+PAL+QARGH++ +    P +   K +                 W+DI  V
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKV 182

Query: 630 Y 632
           Y
Sbjct: 183 Y 183


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 173 PIRPDLVNDVHVSMSKNSRQPYCVSKEVVTKPVLNHGVLDVLS 301
           P + D ++DVH+S S    Q     K V   P L H     LS
Sbjct: 205 PSKHDRLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTSSTLS 247


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 376 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 293
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical
           protein F53A9.7 protein.
          Length = 85

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -1

Query: 385 TYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDHLLAHAVG 233
           T VH D  +  H D     HHH  +  G  H  +  +QH+   H   H  G
Sbjct: 34  TVVHTDGGHHGHVDT----HHHEESHHGEHHGGHHGVQHYESHHESHHHGG 80


>AL132949-40|CAN99706.1|  329|Caenorhabditis elegans Hypothetical
           protein Y53F4B.39b protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 295 HVQYPMIQHWFGDHL 251
           H++Y +I HW GDH+
Sbjct: 105 HIEYIVITHWHGDHV 119


>AL132949-39|CAB61094.1|  295|Caenorhabditis elegans Hypothetical
           protein Y53F4B.39a protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 295 HVQYPMIQHWFGDHL 251
           H++Y +I HW GDH+
Sbjct: 71  HIEYIVITHWHGDHV 85


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +2

Query: 74  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV-SK 250
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV S 
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVASF 241

Query: 251 EVVTKPVLNHGVLDVLSPE 307
           E +T  +++  V +++ P+
Sbjct: 242 EEITDFIVS--VTEIVFPK 258


>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
           pathway homologprotein 1 protein.
          Length = 1451

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = +1

Query: 88  SPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGGGHQT 267
           SPT +  V + +  GAG  QA  ++ Q + PSG G            A L R  GGG+  
Sbjct: 85  SPTTNGMVIQAKTPGAGVIQARHMQSQQSFPSG-GPARVLMNRSSTNAGLSRMVGGGYDQ 143

Query: 268 SAESWGTGRAVARIPRVRGGGT 333
              +   GR +     VR  G+
Sbjct: 144 QLPTAPNGRLMIPSTAVRVPGS 165


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/43 (39%), Positives = 17/43 (39%)
 Frame = +1

Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
           GGGH  SA   G            GGG    G GA G   RGG
Sbjct: 506 GGGHVASAGG-GISAMTGAGGEAPGGGAGGRGGGAHGGAGRGG 547


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/43 (39%), Positives = 17/43 (39%)
 Frame = +1

Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
           GGGH  SA   G            GGG    G GA G   RGG
Sbjct: 506 GGGHVASAGG-GISAMTGAGGEAPGGGAGGRGGGAHGGAGRGG 547


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,786,933
Number of Sequences: 27780
Number of extensions: 291864
Number of successful extensions: 978
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)