Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060053.seq
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 331 YHHHGHAEFGRQHVQY 284
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 343 GQGAFGNMCRGGRMFAP 393
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 410 VGTVASTSDSGERPWRQRCCYRRPSARSG*RTHIEKIPELPLVVA 544
           + +  S+S S   P +      +PS R+G  T+ +++  L   V+
Sbjct: 517 IASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKSTVS 561


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 521 ESFQYVSSSLNERWDAGS 468
           ESF Y    L  RW  G+
Sbjct: 135 ESFSYHKQKLRLRWGTGA 152


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 521 ESFQYVSSSLNERWDAG 471
           ESF Y    +  +W+AG
Sbjct: 157 ESFGYTMRDIRYKWNAG 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,568
Number of Sequences: 438
Number of extensions: 3517
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)