Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060052.seq
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    29   0.82 
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    27   3.3  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   4.4  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   4.4  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   5.8  

>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 53  KLPSQEEMLNSWLKHISSLQVKGMKIIDLNVVGSEMDQ 166
           KLPS+EE    WL    +  V  +  I+ +  G+E D+
Sbjct: 395 KLPSEEENTTKWLNKAINDLVSSLSKINFSTEGTEFDK 432


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 17  AEYAALLASGKLKLPSQEEML 79
           A + A + SG+LKLPS+EE L
Sbjct: 350 AAFLARVWSGRLKLPSKEEQL 370


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 187 RSWCGESAPGTHSDQGLQRRQPLDDLLNYREYDYSIIDN 303
           + W     PG + D   Q + P+DD +N     +S+ DN
Sbjct: 704 KEWLRTYRPGIYMDY-TQPQIPIDDFINRELIQFSMADN 741


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 52  EASITGGNVEFLAETHLFPTG*GHENYRSKRSRFGNGS 165
           E +IT  N + +  + L PT  G  + R   SR G+GS
Sbjct: 453 ENAITKDNDDIILSSQLQPTATGSRSSRLSFSRHGHGS 490


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 199 GESAPGTHSDQGLQRRQPLDDLLNYREYDYSIIDNFHYERKYNPRQNIP 345
           GES     S Q  Q    LDD L Y+ ++  +ID    + +    +N P
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVCDDECTNTENTP 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,038
Number of Sequences: 5004
Number of extensions: 52762
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)