Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060052.seq
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0125 - 1317328-1318049,1318061-1319035,1320994-1321143,132...    33   0.28 
03_04_0216 + 18695292-18696139,18696217-18696339,18697027-186972...    32   0.48 
07_01_0086 + 672173-673603                                             31   1.1  
07_01_0085 + 663694-665022                                             29   4.5  
10_08_0874 - 21205506-21205685,21205825-21205998,21206114-212062...    28   6.0  
10_06_0014 - 9605186-9607609                                           28   6.0  
07_03_0078 - 13147741-13148913                                         28   6.0  

>04_01_0125 -
           1317328-1318049,1318061-1319035,1320994-1321143,
           1322242-1322546,1323447-1323565
          Length = 756

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +2

Query: 5   IVYSAEYAALLASGKLKLPSQEEMLNSWLKHISSLQVKGMKIIDLNVVGSEMDQY-FGNL 181
           +V  A    L A  +L L   E     W+ +++SLQV  M    ++ +  E+ QY   NL
Sbjct: 143 MVVGAVLNNLTALTELHLAGNEITTTGWISNLTSLQVIDMSSNKVHELNGEIGQYLLSNL 202

Query: 182 TEEAGVVRAPPVLTAIRDFNGV 247
           T+   V      LT   DF+ +
Sbjct: 203 TQVEEVHLGDNNLTGTFDFSSL 224


>03_04_0216 +
           18695292-18696139,18696217-18696339,18697027-18697222,
           18697361-18697519
          Length = 441

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 202 ESAPGTHSDQ--GLQRRQPLDDLLNYREYDYSIIDNFHYERKYNPRQNIPCPVE 357
           ES   +H  Q   L   +P DD  N+R+Y    +    Y R Y    ++ CPV+
Sbjct: 117 ESTEVSHGFQTTALTEDKPADDGYNWRKYGQKAVKGGEYPRSYYKCTHLSCPVK 170


>07_01_0086 + 672173-673603
          Length = 476

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 2   YIVYSAEYAALLASGKLKLPSQEEMLNSWLKHISSLQVKGM 124
           +I   A + A + SG+  LPSQEEM  +  +H   ++  G+
Sbjct: 345 FIEVQARWVAQVLSGRRTLPSQEEMQRAVEEHSRGMEAAGL 385


>07_01_0085 + 663694-665022
          Length = 442

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 2   YIVYSAEYAALLASGKLKLPSQEEMLNSWLKHISSLQVKGM 124
           +I   A + A + SG+  LPS EEM  +  +H   ++  G+
Sbjct: 322 FIEVQARWVAQVLSGRRTLPSPEEMQRAVEEHTRGMEAAGL 362


>10_08_0874 -
           21205506-21205685,21205825-21205998,21206114-21206249,
           21206622-21206794,21207612-21207839
          Length = 296

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 17  AEYAALLASGKLKLPSQEEMLNSWLKHISSLQVKG 121
           +++ A + SG++KLPS EEM+       S ++ +G
Sbjct: 190 SKWVAGVLSGRVKLPSSEEMMEDVKAFHSKMEARG 224


>10_06_0014 - 9605186-9607609
          Length = 807

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 252 RLTPLKSLIAVSTGGALTTPASSVKLP 172
           ++ PL  L+   TGG+ +TP SS+ LP
Sbjct: 781 KMPPLPRLLNAITGGSHSTPLSSLDLP 807


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 657 FYFIQMNCFLLGIYIXTNEC 598
           FY+    CFL G++I  +EC
Sbjct: 95  FYWAAQGCFLFGVWIIAHEC 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,118,575
Number of Sequences: 37544
Number of extensions: 306529
Number of successful extensions: 541
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)