Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060052.seq
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)              34   0.093
SB_25416| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)
          Length = 433

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = +2

Query: 17  AEYAALLASGKLKLPSQEEMLNSWLKHISSLQVKGMKIIDLNVVGSEMDQYFGNLTEEAG 196
           +EY   + +GK+KLPS EEM  S  K  + +  +GM     + +G +   Y   + + A 
Sbjct: 323 SEYIISMLTGKVKLPSAEEMHQSAEKEYNEVISEGMAEKYAHFLGPKQWSYNDKIADSAQ 382

Query: 197 VVRAPPVL 220
             R  P++
Sbjct: 383 CSRLSPMV 390


>SB_25416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 35  LASGKLKLPSQEEMLNS--WLKHISSL-QVKGMKIIDLNVVGSEMDQYFGNLTEEAGVVR 205
           L SG  +  S  E++ S  W + +  L Q K      L+V   E+++YF +L  E    +
Sbjct: 148 LVSGYRRNLSTGEVIGSAKWWRRVDCLSQRKSHSPCQLSVQAQELNKYFKDLCWEKEYSK 207

Query: 206 APPV 217
            PPV
Sbjct: 208 PPPV 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,872,993
Number of Sequences: 59808
Number of extensions: 357768
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)