Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060052.seq
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   1.2  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    24   1.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   8.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.2  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 119 GMKIIDLNVVGSEMDQYFGNLTE 187
           G K IDL ++G++ +  FG+  E
Sbjct: 91  GQKTIDLELIGTQAEGIFGSSEE 113


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 119 GMKIIDLNVVGSEMDQYFGNLTE 187
           G K IDL ++G++ +  FG+  E
Sbjct: 59  GQKTIDLELIGTQAEGIFGSSEE 81


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 197 HQLLQLNCRNIDPFPN 150
           H+  QL+ +NI+P+ N
Sbjct: 129 HEWFQLSLKNIEPYNN 144


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 197 HQLLQLNCRNIDPFPN 150
           H+  QL+ +NI+P+ N
Sbjct: 129 HEWFQLSLKNIEPYNN 144


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = +1

Query: 268 NYREYDYSIIDNFHYERKYNPRQNIPCPVEV 360
           NY   +Y+     +Y   Y  +  +P PV +
Sbjct: 95  NYNNNNYNNYKKLYYNINYIEQVPVPIPVPI 125


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 198 TPASSVKLPKY*SISEPTTFRSI 130
           TPA S  +P+   I  P TF+ +
Sbjct: 661 TPAESTFIPEERRIYSPITFQDV 683


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,143
Number of Sequences: 438
Number of extensions: 4370
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)