Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV022000X
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   3.1  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   4.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   4.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   4.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   9.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   9.5  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 97 PFCIFNQSCYLFLKQ 53
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 133 WYPDRFLLRVLLPFC 89
           W P  FL+ V++PFC
Sbjct: 340 WLPF-FLMYVIVPFC 353


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 133 WYPDRFLLRVLLPFC 89
           W P  FL+ V++PFC
Sbjct: 340 WLPF-FLMYVIVPFC 353


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 133 WYPDRFLLRVLLPFC 89
           W P  FL+ V++PFC
Sbjct: 340 WLPF-FLMYVIVPFC 353


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 202 SCCPGRWR 179
           +CCPGR R
Sbjct: 407 ACCPGRVR 414


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 288 HNIRCQTSHR 317
           H  RC+T HR
Sbjct: 205 HGYRCRTMHR 214


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 288 HNIRCQTSHR 317
           H  RC+T HR
Sbjct: 205 HGYRCRTMHR 214


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 196 NRTTPSYVAFTDTERLIGDAPRTRW 270
           +R  P Y  F   +  +G  PRT +
Sbjct: 549 SRDEPKYFIFDAEKTGLGKGPRTTY 573


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,500
Number of Sequences: 438
Number of extensions: 2205
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)