Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021991
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    37   0.004
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    36   0.006
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    28   1.3  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    25   8.9  

>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 603  WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIINEPFKMDVGKGTSSR 746
            W  + D  LLAGI  HG+G WQ I+ND    + ++ F  +      SR
Sbjct: 1132 WGIKEDSMLLAGINKHGFGCWQAIKNDPDLGLHDKIFLDEAKNDKESR 1179


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 603  WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIINEPFKMDVGKGTSS 743
            W  R D  LL+GI  HG+G W +I++D    + ++ F  D  +  +S
Sbjct: 1123 WGPREDSMLLSGICKHGFGAWLEIRDDPELKMKDKIFLEDTKQTDNS 1169


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +3

Query: 567 RASGRARQEYEIWHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIIN 704
           R   + R+    W  +    LL G   HG G W+ I  D RF   N
Sbjct: 46  RKPTKVRKPRVKWTEKETNDLLRGCQIHGVGNWKKILLDERFHFTN 91


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 570 ASGRARQEYEIWHRRHDYWLLAGIVTHGYGR 662
           A GRA    EIW+ R+D W L  ++  G  R
Sbjct: 38  AVGRASGNIEIWNPRND-WCLKTVLYGGVDR 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,256
Number of Sequences: 5004
Number of extensions: 27733
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)