Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021991
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 83 3e-16
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 83 3e-16
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 75 7e-14
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 75 7e-14
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 75 7e-14
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 34 0.13
AC006809-2|AAF59625.1| 160|Caenorhabditis elegans Hypothetical ... 29 3.6
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 29 4.8
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 29 4.8
AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 28 6.3
Z48009-11|CAA88088.2| 467|Caenorhabditis elegans Hypothetical p... 28 8.3
U88172-2|AAB42262.1| 368|Caenorhabditis elegans Hypothetical pr... 28 8.3
U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate rece... 28 8.3
U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate rece... 28 8.3
AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA iono... 28 8.3
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 4/65 (6%)
Frame = +3
Query: 579 RARQEYEIWHRRHDYWLLAGIVTHGYGRWQ----DIQNDLRFAIINEPFKMDVGKGTSSR 746
R +EYEIW+RRHDYWLLAG+V HGYGR+Q DI ND RF+++NEPFK + T S
Sbjct: 1520 RNGKEYEIWYRRHDYWLLAGVVVHGYGRFQANFNDIINDPRFSVLNEPFKEVGAEATGSD 1579
Query: 747 LRISF 761
++ F
Sbjct: 1580 IKAKF 1584
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1
Query: 514 FNIADGGFTELHTLWLNEERAAAPGR 591
FNI DGGFTELH+LW NEE+ A G+
Sbjct: 1498 FNICDGGFTELHSLWANEEKVARNGK 1523
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 4/65 (6%)
Frame = +3
Query: 579 RARQEYEIWHRRHDYWLLAGIVTHGYGRWQ----DIQNDLRFAIINEPFKMDVGKGTSSR 746
R +EYEIW+RRHDYWLLAG+V HGYGR+Q DI ND RF+++NEPFK + T S
Sbjct: 1520 RNGKEYEIWYRRHDYWLLAGVVVHGYGRFQANFNDIINDPRFSVLNEPFKEVGAEATGSD 1579
Query: 747 LRISF 761
++ F
Sbjct: 1580 IKAKF 1584
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1
Query: 514 FNIADGGFTELHTLWLNEERAAAPGR 591
FNI DGGFTELH+LW NEE+ A G+
Sbjct: 1498 FNICDGGFTELHSLWANEEKVARNGK 1523
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 74.5 bits (175), Expect = 7e-14
Identities = 31/50 (62%), Positives = 39/50 (78%), Gaps = 4/50 (8%)
Frame = +3
Query: 579 RARQEYEIWHRRHDYWLLAGIVTHGYGRW----QDIQNDLRFAIINEPFK 716
R +EYEIWHRRHD+WLLA + +GYGR+ QDI ND +F+I+NEPFK
Sbjct: 1507 RNGKEYEIWHRRHDFWLLAAVAVYGYGRYQINFQDIMNDPKFSIVNEPFK 1556
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +1
Query: 514 FNIADGGFTELHTLWLNEERAAAPGR 591
FNI DGG+TELH+LW+NEE+ A G+
Sbjct: 1485 FNICDGGYTELHSLWINEEKVARNGK 1510
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 74.5 bits (175), Expect = 7e-14
Identities = 31/50 (62%), Positives = 39/50 (78%), Gaps = 4/50 (8%)
Frame = +3
Query: 579 RARQEYEIWHRRHDYWLLAGIVTHGYGRW----QDIQNDLRFAIINEPFK 716
R +EYEIWHRRHD+WLLA + +GYGR+ QDI ND +F+I+NEPFK
Sbjct: 1507 RNGKEYEIWHRRHDFWLLAAVAVYGYGRYQINFQDIMNDPKFSIVNEPFK 1556
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +1
Query: 514 FNIADGGFTELHTLWLNEERAAAPGR 591
FNI DGG+TELH+LW+NEE+ A G+
Sbjct: 1485 FNICDGGYTELHSLWINEEKVARNGK 1510
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 74.5 bits (175), Expect = 7e-14
Identities = 31/50 (62%), Positives = 39/50 (78%), Gaps = 4/50 (8%)
Frame = +3
Query: 579 RARQEYEIWHRRHDYWLLAGIVTHGYGRW----QDIQNDLRFAIINEPFK 716
R +EYEIWHRRHD+WLLA + +GYGR+ QDI ND +F+I+NEPFK
Sbjct: 1507 RNGKEYEIWHRRHDFWLLAAVAVYGYGRYQINFQDIMNDPKFSIVNEPFK 1556
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +1
Query: 514 FNIADGGFTELHTLWLNEERAAAPGR 591
FNI DGG+TELH+LW+NEE+ A G+
Sbjct: 1485 FNICDGGYTELHSLWINEEKVARNGK 1510
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
H06O01.2 protein.
Length = 1461
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = +3
Query: 570 ASGRARQEYEI-WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIINEPFKMDVGK---GT 737
A+ + ++ +++ W R D LL G+ +GYG W+ I+ D + ++ F D K G
Sbjct: 1144 ANAKLQKGWDVDWSRPDDSALLLGVWKYGYGSWEAIKMDPTLGLADKIFIKDKTKKPQGK 1203
Query: 738 SSRLRISF 761
+ ++R+ +
Sbjct: 1204 NLQVRVDY 1211
>AC006809-2|AAF59625.1| 160|Caenorhabditis elegans Hypothetical
protein Y5H2A.1 protein.
Length = 160
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 592 NTKSGTEDTTTGCWPESSRTDTVAGRTYKTTCDSRSLTSHSRWTSAKE 735
NT + T TTT E+ TV +TY TTC + + W E
Sbjct: 28 NTTTTTVATTTTTVSEAPDPCTVCPKTYDTTCQGFGIPNLISWCPTAE 75
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 180 AEPMDTADVKEDSAEEKESQKEDEKRPK 263
AE + D KE+ +EK+ +K +EKR K
Sbjct: 885 AEGEEKKDEKEEKRDEKKDEKREEKREK 912
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 180 AEPMDTADVKEDSAEEKESQKEDEKRPK 263
AE + D KE+ +EK+ +K +EKR K
Sbjct: 885 AEGEEKKDEKEEKRDEKKDEKREEKREK 912
>AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical
protein F36H12.3 protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 198 ADVKEDSAEEKESQKEDEKRPK 263
+D KE+ EEK+ +KED+K K
Sbjct: 83 SDKKEEKKEEKKEEKEDKKEEK 104
>Z48009-11|CAA88088.2| 467|Caenorhabditis elegans Hypothetical
protein AH6.5 protein.
Length = 467
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 598 KSGTEDTTTGCWPESSRTDTVAGRTYKTTCDSRSLTSHSRW 720
KSG + +TT P +S T R Y+T R+ S SR+
Sbjct: 173 KSGAQISTTRTVPLTSSTPLPTSREYETVQRDRNRNSQSRY 213
>U88172-2|AAB42262.1| 368|Caenorhabditis elegans Hypothetical
protein ZK354.6 protein.
Length = 368
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 192 DTADVKEDSAEEKESQKEDEKRPK 263
D + K++ EEK +KEDEK+ K
Sbjct: 19 DESKKKDEKKEEKSKRKEDEKKEK 42
>U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform b protein.
Length = 977
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 627 LLAGIVTHGYGRWQDIQNDLRFAIIN-EPFKMD-VGKGTSS 743
+LAG YG ++DI N ++ +I+ EP K + +GK T +
Sbjct: 97 MLAGTNFKNYGIYEDIANHMKMPLIDWEPSKSENIGKTTEN 137
>U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform a protein.
Length = 908
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 627 LLAGIVTHGYGRWQDIQNDLRFAIIN-EPFKMD-VGKGTSS 743
+LAG YG ++DI N ++ +I+ EP K + +GK T +
Sbjct: 97 MLAGTNFKNYGIYEDIANHMKMPLIDWEPSKSENIGKTTEN 137
>AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA
ionotropic glutamate receptorsubunit GLR-2 protein.
Length = 977
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 627 LLAGIVTHGYGRWQDIQNDLRFAIIN-EPFKMD-VGKGTSS 743
+LAG YG ++DI N ++ +I+ EP K + +GK T +
Sbjct: 97 MLAGTNFKNYGIYEDIANHMKMPLIDWEPSKSENIGKTTEN 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,420,710
Number of Sequences: 27780
Number of extensions: 166820
Number of successful extensions: 950
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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