Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021983
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    26   4.8  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    26   4.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   4.8  

>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = -2

Query: 457 WYRASFRSNC--VTF--FRISYFIAMTPGRVSVHNEHLYA*VECHEDQAATEDSCEQ*QI 290
           W+ A+F  N   V F  +  ++F     G +S ++E  +  ++     +A  ++CE  Q+
Sbjct: 9   WFLAAFIVNADNVQFEDYESNFFFKEHLGTLSPYHEPYFDGLD-----SAFPETCEIQQV 63

Query: 289 FEAQRHSSRSP 257
              QRH SR+P
Sbjct: 64  HLLQRHGSRNP 74


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/21 (47%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
 Frame = -1

Query: 173 VVASGGFISKYTNDSIV-LYH 114
           V+A+GG+ + Y++DS++ LYH
Sbjct: 230 VLATGGYAADYSDDSLLKLYH 250


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 446 CTIPGLRAFDESIKKFSEPPKNS-NDVTMPIIRFSNQTR 559
           CT+P       S++K   PP NS N       R SN+TR
Sbjct: 541 CTLPYTYQPFSSVEKIETPPNNSKNQTYRRSSRGSNKTR 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,298
Number of Sequences: 5004
Number of extensions: 46773
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)