Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021983
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.43 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 441 KDARYQDSGRLMKALKNSVSPQKIRTM 521
           ++AR +DSG+ +  + NSV  + + T+
Sbjct: 275 REARVEDSGKYLCIVNNSVGGESVETV 301


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 294 KYLKRNGTARGLPHLLLLQSYCNTSRLQRFNTKLWKIY 181
           + L   G   G+P  L L     +S   ++N+++W  Y
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSRIWGGY 640


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 294 KYLKRNGTARGLPHLLLLQSYCNTSRLQRFNTKLWKIY 181
           + L   G   G+P  L L     +S   ++N+++W  Y
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSRIWGGY 640


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 79  TITTPRVCVFIKWYKTIE 132
           TITTP +CV +  +  I+
Sbjct: 496 TITTPAICVGVFTFNIIK 513


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 79  TITTPRVCVFIKWYKTIE 132
           TITTP +CV +  +  I+
Sbjct: 549 TITTPAICVGVFTFNIIK 566


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,870
Number of Sequences: 438
Number of extensions: 3596
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)