Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021979
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    29   0.66 
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.5  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   2.7  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   3.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   4.7  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    25   8.2  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    25   8.2  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   8.2  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 279 CLVCGRTFVPQSLAKHVKICEKMTIKKRKTF 371
           C +CGR F   +  +H  +  + T+++RKT+
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTY 236


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 56  EEKKGNGSLNINSLQSLPDRRLPNQSLHLQAMKYSNRFRGRQPPIESDLHLPLQFPPS 229
           +  KG+  LN++  +  P+R LP +SL L+ MK       + P   S    PL+  P+
Sbjct: 758 QRSKGDVILNLHLPKVNPERFLPTKSLKLEEMK---PLEEKVPIYRSSSKQPLRIHPT 812


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 92  SLQSLPDRRLPNQSLHLQAMKYSNRFRGRQPPIES-DLH 205
           S+ S  D+R  NQS++ ++ KYS R     P + S DLH
Sbjct: 525 SILSHEDKR-ENQSVNSESSKYSPRSSNHSPTLHSKDLH 562


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = -2

Query: 310 CGTKVRPQTRQGINGKGPEVPEPPGQLAGWELEGKVEVRLDWGLASSESV--GILHCLQM 137
           C TK R    Q ++ K PE P     LA  +LEG +  R+         V  G  HC + 
Sbjct: 37  CNTKERELMVQQVDSKKPETPTDLEPLAN-KLEGPLSERVHLNTTLDYEVLRGQNHCQKQ 95

Query: 136 E*LIRETAIGKTLQTVDVETAVSLFF 59
                +T I  + Q  + E    + +
Sbjct: 96  NTTQTKTTISGSEQLFNDEKPKKIIY 121


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -2

Query: 439 GRPKFFGKYCSKSVPSRLCLEESKVFRFLIVIFSQILTCLARDCGTKVRPQTRQ 278
           G  KF+G Y S S P+        + +   VIFS     L    G   +P  RQ
Sbjct: 785 GSRKFYGDYLSASKPNGTLWNTCGLSQNDHVIFSMRCEVLVHKLGRTSKPSPRQ 838


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 612 APLHVPLESTNAERSAQCGHFCSSAIGFVM 523
           AP H+  E+ NA  +A  G   ++AIG +M
Sbjct: 279 APFHMSEETANASVNAPRGIILTAAIGGIM 308


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 464 ESPAHCQTHIET*TASVRSAITKPMAE 544
           E+   CQ H +T   ++R AIT+ M E
Sbjct: 770 EAKEICQAHFKTALLALRKAITRDMLE 796


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = -3

Query: 621 LVRAPLHVPLESTNAERSAQCGHFCSSAIGFVMALRTDA 505
           L++A +H P+ + +        + C + +GF+  ++ DA
Sbjct: 408 LLQASIHKPVHTGSTPWQGNRRYLCLNLVGFIWTVQQDA 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,040
Number of Sequences: 5004
Number of extensions: 51885
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)