Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021979
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0753 + 6810239-6810661,6812495-6812584,6812724-6812894,681... 30 2.1
06_01_0352 + 2541022-2542069,2542280-2542335 29 2.8
11_01_0674 - 5502275-5502954,5503054-5504746 29 3.7
09_02_0398 + 8559332-8559718,8561264-8561386,8561537-8561581,856... 29 3.7
06_01_0972 - 7509148-7509516,7509748-7509887,7509968-7510035,751... 29 3.7
01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816... 29 4.9
04_04_1589 - 34636563-34636856,34636982-34637159,34637349-346374... 28 6.4
06_01_0746 + 5580755-5582119 28 8.5
05_07_0239 - 28599452-28599564,28599685-28599799,28600051-286001... 28 8.5
04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990... 28 8.5
02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722 28 8.5
>12_01_0753 +
6810239-6810661,6812495-6812584,6812724-6812894,
6813015-6813109,6813538-6813658,6813884-6814015
Length = 343
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 346 IFSQILTCLARDCGTKVRPQTRQGINGKGPEVPEPP 239
+FS L+C D K+R + G+ G G EPP
Sbjct: 63 LFSHRLSCRVMDGLAKLRVRVHHGVGGAGAAAVEPP 98
>06_01_0352 + 2541022-2542069,2542280-2542335
Length = 367
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -2
Query: 436 RPKFFGKYCSKSVPSRLCLE 377
R F GKYCSKSV S C E
Sbjct: 305 RALFIGKYCSKSVSSEECEE 324
>11_01_0674 - 5502275-5502954,5503054-5504746
Length = 790
Score = 29.1 bits (62), Expect = 3.7
Identities = 31/101 (30%), Positives = 42/101 (41%)
Frame = -2
Query: 571 LGAVRTLLQFCHWLCYGTADRCGLGFNVGLAVGGGLFSRNGLFSGRPKFFGKYCSKSVPS 392
LG + LL CY T D G LAVG L SRNG F+ FF + S
Sbjct: 8 LGLLLLLLSMHTPSCYATNDTLAAGQL--LAVGEKLISRNGKFA--LGFFKPTLPEDAGS 63
Query: 391 RLCLEESKVFRFLIVIFSQILTCLARDCGTKVRPQTRQGIN 269
+ S + +L + F++I C + RP T +N
Sbjct: 64 KYKNIASPGW-YLAIWFNEIPVCTTVWVANRERPITDHELN 103
>09_02_0398 +
8559332-8559718,8561264-8561386,8561537-8561581,
8562215-8562290,8562398-8562510,8562774-8562821,
8563101-8563229
Length = 306
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 430 KFFGKYCSKSVPSRLCLEESKVFRFLIVIF 341
+ FG YCS V R+C + S RF + F
Sbjct: 178 ELFGSYCSVVVDCRICGDHSSGLRFAFIEF 207
>06_01_0972 -
7509148-7509516,7509748-7509887,7509968-7510035,
7510504-7510548,7510657-7510676,7510828-7510890,
7510979-7511190,7511238-7511334
Length = 337
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 276 ALTVRVPRFRSHRDNWLGGNWRGRWRSDSIGGW 178
A VRVPR S + W+GG G+ + ++ GW
Sbjct: 299 AEAVRVPRLWSQQHGWVGGGGGGQLKM-ALAGW 330
>01_06_1512 +
37881055-37881229,37881388-37881444,37881537-37881627,
37881759-37881919,37882002-37882129,37882215-37882352,
37882665-37882757,37882858-37882975,37883064-37883194
Length = 363
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -1
Query: 671 ASAMCARVCGAAGKILALSAHHSTCLSKARTPNARRSADTSAVLPLALLWH 519
AS + + +CG + HST R P+ SAD A LP + WH
Sbjct: 288 ASKIASEICGFLTVLAGTLVLHST-----REPDQTLSADLYAPLPPKIYWH 333
>04_04_1589 -
34636563-34636856,34636982-34637159,34637349-34637461,
34637713-34638316,34638401-34638581,34638674-34638816,
34638972-34639141,34639221-34639307,34639414-34639639,
34639825-34639964
Length = 711
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +2
Query: 77 SLNINSLQSLPDRRLPNQSLHLQAMKYSNRFRGRQPPIES---DLHLPLQFPPSQLSRWL 247
+L N + LP ++L+ Q YS+RFR + ++S DL L FP S + L
Sbjct: 391 TLAFNLAEKLPKGDKILEALYGQMKDYSSRFRVDEDSVQSSSDDLTLADPFPLSAYT--L 448
Query: 248 RNLGTLTV 271
N+G LT+
Sbjct: 449 VNMGLLTL 456
>06_01_0746 + 5580755-5582119
Length = 454
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = -1
Query: 671 ASAMCARVCGAAGKILALSAHHSTCLSKARTPNARRSADTS-AVLPLALLWHCGPMRFRF 495
A A A GA G ++A H A RR A + A L P+R R
Sbjct: 16 ARAASAPGAGAGGVVVARVTHADAGRGLAMPEIVRRMAHRARARRRLLSAAEAAPVRARV 75
Query: 494 QCGFGSGRGTLLEEW 450
+ G G+G G + E+
Sbjct: 76 RAGLGAGGGIVTNEY 90
>05_07_0239 -
28599452-28599564,28599685-28599799,28600051-28600116,
28600270-28600329,28600571-28600617,28601118-28601202,
28601554-28601646,28601727-28601791,28601942-28602017,
28602110-28602175,28603082-28603141,28603400-28603489,
28603594-28603893
Length = 411
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 566 RSADTSAVLPLALLWHCGPMRFRFQCGFGS 477
R + SAVL L+ GP++F F CGF S
Sbjct: 56 RDSSVSAVL-CTLIVALGPIQFGFTCGFSS 84
>04_04_1163 -
31398565-31398654,31398729-31398812,31398893-31399037,
31399118-31399239,31399338-31399376,31399491-31399601,
31399682-31399804,31399946-31400032,31400136-31400207,
31400349-31400621,31400704-31400895,31400988-31401171,
31401339-31401480,31401578-31401821,31401959-31402603,
31403024-31403293
Length = 940
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 29 KQCSAVFDFEEKKGNGSLNINSLQSLPDRRLPNQSLHLQ 145
K CS V D + G S I L+ LP ++P +LHL+
Sbjct: 185 KFCSKVEDSDLAAGEESNPILHLEILPSPQVPKHALHLR 223
>02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722
Length = 1155
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Frame = +2
Query: 77 SLNINSLQSLPDRRLPNQSLHLQAMKYSNRFRGRQPPIE-----SDLHLPLQFPPSQLSR 241
SL+ N L + N S +SN GR PP+E S L L +
Sbjct: 248 SLSSNQLSGSIPESIGNLSALTAIAAFSNNLTGRIPPLERLSSLSYLGLASNNLGGTIPS 307
Query: 242 WLRNLGTLT 268
WL NL +LT
Sbjct: 308 WLGNLSSLT 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,296,166
Number of Sequences: 37544
Number of extensions: 380583
Number of successful extensions: 1364
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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