Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021979
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41272-4|AAA82448.2|  349|Caenorhabditis elegans Hypothetical pr...    48   5e-06
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC132211-2|AAN01435.1|  254|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z32840-5|CAD88215.1|  509|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z32840-4|CAA83680.1|  460|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z32840-3|CAB63430.2|  457|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U00025-2|ABA54414.1|  418|Caenorhabditis elegans Amp-activated k...    29   4.4  
U00025-1|ABA54413.1|  589|Caenorhabditis elegans Amp-activated k...    29   4.4  
AY347272-1|AAR06927.1|  589|Caenorhabditis elegans AMP-activated...    29   4.4  
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    29   4.4  
AL132876-11|CAC48133.1|  325|Caenorhabditis elegans Hypothetical...    28   5.8  
Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z70271-1|CAB61041.1|  393|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z67995-3|CAI79213.1|  150|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of m...    28   7.7  
U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.        28   7.7  
U29244-14|AAC71095.1|  774|Caenorhabditis elegans Fzo (fzo mitoc...    28   7.7  
AF103732-1|AAD03603.1|  393|Caenorhabditis elegans Wnt homolog p...    28   7.7  
AC024859-12|AAK29966.1|  477|Caenorhabditis elegans Hypothetical...    28   7.7  

>U41272-4|AAA82448.2|  349|Caenorhabditis elegans Hypothetical
           protein T03G11.3 protein.
          Length = 349

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 20/43 (46%), Positives = 25/43 (58%)
 Frame = +3

Query: 279 CLVCGRTFVPQSLAKHVKICEKMTIKKRKTFDSSRQRREGTDL 407
           C +C R F+  SL KH   C K+    RK FDS +QR  G+DL
Sbjct: 23  CPICDRRFIKSSLEKHESACRKLASLHRKPFDSGKQRASGSDL 65


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical protein
            B0244.6 protein.
          Length = 982

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 29/112 (25%), Positives = 45/112 (40%)
 Frame = -2

Query: 490  VGLAVGGGLFSRNGLFSGRPKFFGKYCSKSVPSRLCLEESKVFRFLIVIFSQILTCLARD 311
            V ++V  GLF   G   G  K   + CS  V     +  S  F   I+I S +  CL+  
Sbjct: 778  VVVSVPTGLFQTAGYVPGPIKCDSQVCSPIVGLINFIIVSFAFLITIIILSFVFICLS-- 835

Query: 310  CGTKVRPQTRQGINGKGPEVPEPPGQLAGWELEGKVEVRLDWGLASSESVGI 155
                +R   + G       +    G+L GW L   + + L  G+  S  +G+
Sbjct: 836  --FHIRKAKKLGSYTSSQTLHHARGRL-GWTLTAIIVISLAEGIPESLLIGL 884


>AC132211-2|AAN01435.1|  254|Caenorhabditis elegans Hypothetical
           protein Y108F1.4 protein.
          Length = 254

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 439 GRPKFFGKYCSKSVPSRLCLEESKVFRFLIVIFSQILTCLARD 311
           G  K F    ++ +P R        F FL  IF+ IL CL +D
Sbjct: 172 GHVKSFTSLRTREIPQRASWNFRAGFEFLSTIFTYILNCLEKD 214


>Z32840-5|CAD88215.1|  509|Caenorhabditis elegans Hypothetical
           protein C07G2.2c protein.
          Length = 509

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
 Frame = +2

Query: 29  KQCSAVFDFEEKKGNGSLNINSLQSLPDRRLPNQSLHLQAMKYSNRFRGRQPPIESDLHL 208
           ++C AV  FE K    +  I+S    P+    NQSL        ++F G      SDL L
Sbjct: 100 QRCLAVNPFEAKFREANQKISSGSMQPNTSGANQSLEALEANGGSQFSGSNAGTMSDLLL 159

Query: 209 -----PLQFPPSQLSRWLRNLG 259
                 LQ  P   S  L N G
Sbjct: 160 KIPQASLQHSPGIFSNMLLNAG 181


>Z32840-4|CAA83680.1|  460|Caenorhabditis elegans Hypothetical
           protein C07G2.2b protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
 Frame = +2

Query: 29  KQCSAVFDFEEKKGNGSLNINSLQSLPDRRLPNQSLHLQAMKYSNRFRGRQPPIESDLHL 208
           ++C AV  FE K    +  I+S    P+    NQSL        ++F G      SDL L
Sbjct: 51  QRCLAVNPFEAKFREANQKISSGSMQPNTSGANQSLEALEANGGSQFSGSNAGTMSDLLL 110

Query: 209 -----PLQFPPSQLSRWLRNLG 259
                 LQ  P   S  L N G
Sbjct: 111 KIPQASLQHSPGIFSNMLLNAG 132


>Z32840-3|CAB63430.2|  457|Caenorhabditis elegans Hypothetical
           protein C07G2.2a protein.
          Length = 457

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
 Frame = +2

Query: 29  KQCSAVFDFEEKKGNGSLNINSLQSLPDRRLPNQSLHLQAMKYSNRFRGRQPPIESDLHL 208
           ++C AV  FE K    +  I+S    P+    NQSL        ++F G      SDL L
Sbjct: 51  QRCLAVNPFEAKFREANQKISSGSMQPNTSGANQSLEALEANGGSQFSGSNAGTMSDLLL 110

Query: 209 -----PLQFPPSQLSRWLRNLG 259
                 LQ  P   S  L N G
Sbjct: 111 KIPQASLQHSPGIFSNMLLNAG 132


>U00025-2|ABA54414.1|  418|Caenorhabditis elegans Amp-activated
           kinase protein 1,isoform b protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 635 GKILALSAHHSTCLSKARTPNARRSADTSAVLPLALLWHCG 513
           G +LA   HH  C++     N +R+AD S+   +   W  G
Sbjct: 145 GALLAEDHHHFLCIAYRLEVNHKRNADESSQKAMEDFWEIG 185


>U00025-1|ABA54413.1|  589|Caenorhabditis elegans Amp-activated
           kinase protein 1,isoform a protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 635 GKILALSAHHSTCLSKARTPNARRSADTSAVLPLALLWHCG 513
           G +LA   HH  C++     N +R+AD S+   +   W  G
Sbjct: 316 GALLAEDHHHFLCIAYRLEVNHKRNADESSQKAMEDFWEIG 356


>AY347272-1|AAR06927.1|  589|Caenorhabditis elegans AMP-activated
           protein kinase alphasubunit 2 protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 635 GKILALSAHHSTCLSKARTPNARRSADTSAVLPLALLWHCG 513
           G +LA   HH  C++     N +R+AD S+   +   W  G
Sbjct: 316 GALLAEDHHHFLCIAYRLEVNHKRNADESSQKAMEDFWEIG 356


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +3

Query: 282 LVCGRTFVPQSLAKHVKICEKMTIKKRKTFDSSRQRREGTDLEQYLPKNFG 434
           L CGR    + + +  + CE MT   R   D     R  T +E Y PK  G
Sbjct: 311 LTCGRCDEVERVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENYCPKACG 361


>AL132876-11|CAC48133.1|  325|Caenorhabditis elegans Hypothetical
           protein Y105E8A.13 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 409 SKSVPSRLCLEESKVFRFLIVIFSQILTC-LARDCGTKVRPQTRQ 278
           SK+V S  CL+ SKVF   I+  ++I  C L  D   + +P  R+
Sbjct: 69  SKNVSSAFCLDFSKVFSKKILFQAKINACVLGMDRRDRAQPPHRR 113


>Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical
           protein F20G4.2 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 47  FDFEEKKGNGSLNINSLQSLPDRRLPNQSLHLQAMKYSNRFRGRQPPIESDLHLPLQ 217
           F FEE +    LN+N L+  P+++L           Y+N ++  +  IE    L LQ
Sbjct: 285 FRFEEFEEVEKLNVNCLKKSPEKKLRFAEPDEPTWDYNNDYQKTEHFIEESCGLHLQ 341


>Z70271-1|CAB61041.1|  393|Caenorhabditis elegans Hypothetical
           protein W08D2.1 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 383 TETRRYRFRTILAKELRSSRKQS 451
           TETR  +F+ IL K LRS+ K++
Sbjct: 117 TETRHGKFQDILGKTLRSANKEA 139


>Z67995-3|CAI79213.1|  150|Caenorhabditis elegans Hypothetical
           protein M153.4 protein.
          Length = 150

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 279 CLVCGRTFVPQSLAKHVKICEKMTIKKRKTFDSSRQR 389
           C +CGR F  +S+A H   C K    + +    S++R
Sbjct: 39  CFICGRQFGSKSIAIHEPQCLKKWHAENEKLPKSKRR 75


>U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 439 GRPKFFGKYCSKSVPSRLCLEESKVFRFLIVIFSQILTCLARD 311
           G  K      ++ +P R        F FL  IF+ IL CL +D
Sbjct: 311 GHVKSLTSLRTREIPQRASWNFRAGFEFLSTIFTYILNCLEKD 353


>U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 439 GRPKFFGKYCSKSVPSRLCLEESKVFRFLIVIFSQILTCLARD 311
           G  K      ++ +P R        F FL  IF+ IL CL +D
Sbjct: 311 GHVKSLTSLRTREIPQRASWNFRAGFEFLSTIFTYILNCLEKD 353


>U29244-14|AAC71095.1|  774|Caenorhabditis elegans Fzo (fzo
           mitochondrial fusion protein)related protein 1 protein.
          Length = 774

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 568 RAFGVRAFERHVEWCADKAKILP--AAPHTRAHIADAKQRLN 687
           RA   + FERH E C  ++ I     A + RAH    K RLN
Sbjct: 344 RALEFQNFERHFEHCISRSAIHTKFEAHNRRAHEMIGKMRLN 385


>AF103732-1|AAD03603.1|  393|Caenorhabditis elegans Wnt homolog
           protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 383 TETRRYRFRTILAKELRSSRKQS 451
           TETR  +F+ IL K LRS+ K++
Sbjct: 117 TETRHGKFQDILGKTLRSANKEA 139


>AC024859-12|AAK29966.1|  477|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.16 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 523 GTADRCGLGFNVGLAVGGGLFSRNGLFSGR 434
           G +   GLGF +GL +G GL    G  SG+
Sbjct: 307 GLSSDLGLGFGLGLGLGSGLSHMIGCGSGQ 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,780
Number of Sequences: 27780
Number of extensions: 304098
Number of successful extensions: 1010
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)