Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021976
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...   157   1e-39
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    27   2.8  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score =  157 bits (381), Expect = 1e-39
 Identities = 67/86 (77%), Positives = 77/86 (89%)
 Frame = +1

Query: 250 SSFGLVQEGFKTAVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGD 429
           ++FGL + GF TA +TKLFPTRSHTVAAQGGINAALGNM +D W WH YDTVKGSDWLGD
Sbjct: 69  ATFGLAEAGFNTACITKLFPTRSHTVAAQGGINAALGNMTKDDWRWHFYDTVKGSDWLGD 128

Query: 430 QDAIHYMTKEAPHAVIELDNYGMPFS 507
           QDAIHYMTKEAP AV+EL+++G+PFS
Sbjct: 129 QDAIHYMTKEAPKAVLELEHFGVPFS 154



 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 24/28 (85%), Positives = 27/28 (96%)
 Frame = +2

Query: 518 GKIYQRAFGGQSLKFGKGGQAHRCCAVA 601
           GKIYQRAFGGQSL++GKGGQA+RC AVA
Sbjct: 159 GKIYQRAFGGQSLEYGKGGQAYRCAAVA 186


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 493 GMPFSPPRRKDLPEGLRRTVSQVRKGRTSS*MLRRSL 603
           GMP  P + KDL   ++ T+  + +G+T+   L++ +
Sbjct: 99  GMPRGPRKGKDLVHTIKVTLEDLYRGKTTKLALQKKV 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,834
Number of Sequences: 5004
Number of extensions: 49163
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)